PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568396.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 255aa    MW: 29125.6 Da    PI: 5.011
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-08209237129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      r+ W++eEd +l  av+++G g+W+ Ia 
   XP_012568396.1 209 RKIWSEEEDMQLQAAVQKWGEGNWAQIAG 237
                      567************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.481204236IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.1E-9206242IPR009057Homeodomain-like
SuperFamilySSF466891.79E-8206250IPR009057Homeodomain-like
PfamPF002492.3E-6211236IPR001005SANT/Myb domain
CDDcd116601.98E-7212251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKRKQQSKNQ NNKLSFTEED SLFLLEKYDA STVLKLLQEI ANHAHWKINW NELVNKSSTG  60
ISSAKEYRIL WRHLAYGYPL IDDYFENQYS SPMDDDSDLE CERETLPAIP QQTALQASAC  120
VEAMIASVSM SQSTPTSLTI EAPLTINVPT HASFSTTYSQ PYYIQEKNIN FPVIVERQPR  180
SNIINVPSTT KDLQENELVN HNTPIQKKRK IWSEEEDMQL QAAVQKWGEG NWAQIAGRDD  240
FPVDRNAAQL SKVVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490489.30.0telomeric repeat-binding factor 2-like isoform X2
TrEMBLA0A1S2XJX40.0A0A1S2XJX4_CICAR; telomeric repeat-binding factor 2-like isoform X2
STRINGXP_004490489.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-52MYB_related family protein