PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568397.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 225aa    MW: 25737.8 Da    PI: 5.7276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.1e-09169215145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                      r+ W++eEd +l  av+++G g+W+ Ia +      R + q+  rw+
   XP_012568397.1 169 RKIWSEEEDMQLQAAVQKWGEGNWAQIAGRDDfpVDRNAAQLSKRWR 215
                      567*************************8766668888888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.772163222IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-12166219IPR009057Homeodomain-like
SuperFamilySSF466895.52E-12166218IPR009057Homeodomain-like
SMARTSM007172.0E-8168220IPR001005SANT/Myb domain
PfamPF002493.9E-7171215IPR001005SANT/Myb domain
CDDcd116604.15E-11172219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKRKQQSKNQ NNKLSFTEED SLFLLEKYDA STVLKLLQEI ANHAHWKINW NELDDDSDLE  60
CERETLPAIP QQTALQASAC VEAMIASVSM SQSTPTSLTI EAPLTINVPT HASFSTTYSQ  120
PYYIQEKNIN FPVIVERQPR SNIINVPSTT KDLQENELVN HNTPIQKKRK IWSEEEDMQL  180
QAAVQKWGEG NWAQIAGRDD FPVDRNAAQL SKRWRILRNK AGNTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568397.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490489.31e-159telomeric repeat-binding factor 2-like isoform X2
TrEMBLA0A1S2XJX41e-157A0A1S2XJX4_CICAR; telomeric repeat-binding factor 2-like isoform X2
STRINGXP_004490489.11e-158(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-36MYB_related family protein