PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568587.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 296aa    MW: 34330.1 Da    PI: 7.1689
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568587.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-092262602155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps+++++ LA+++gL+ +q+ +WF N+R ++
  XP_012568587.1 226 KWPYPSESQKQALAESTGLDLKQINNWFINQRKRH 260
                     569*****************************885 PP
2ELK38.52.4e-13180201122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK qLlrKYsgyLgsLk+EF+
  XP_012568587.1 180 ELKVQLLRKYSGYLGSLKKEFL 201
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.4E-144791IPR005540KNOX1
PfamPF037907.2E-194990IPR005540KNOX1
SMARTSM012564.9E-2699150IPR005541KNOX2
PfamPF037917.2E-22103148IPR005541KNOX2
PfamPF037891.8E-9180201IPR005539ELK domain
SMARTSM011887.1E-7180201IPR005539ELK domain
PROSITE profilePS5121311.139180200IPR005539ELK domain
PROSITE profilePS5007112.228200263IPR001356Homeobox domain
SMARTSM003892.8E-12202267IPR001356Homeobox domain
SuperFamilySSF466891.84E-19202274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28205266IPR009057Homeodomain-like
CDDcd000861.23E-12212264No hitNo description
PfamPF059202.5E-17220259IPR008422Homeobox KN domain
PROSITE patternPS000270238261IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDHHHHPMNI MNINMDTTNR KFHSFPLTTN NSSLQQHHHN YNNTANVVVR DKIMAHPLFP  60
RLLSSYLNCL KVGAPPEVVA SLEESCAKCE TLNGSGRTGS SCLGEDPALD QFMEAYCEML  120
IKYEQELTKP FKEAMLFLSR IESQLKALAV STDFGQSESP SHNEIDMHEN NLDTQAEDQE  180
LKVQLLRKYS GYLGSLKKEF LKKKKNGKLP KEARQQLLDW WNRHYKWPYP SESQKQALAE  240
STGLDLKQIN NWFINQRKRH WKPSEDMQFA VMDATNYYME NVMCKPFPMD AMPMLL
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1280610.0EF128061.1 Medicago truncatula class I KNOX homeobox transcription factor (KNOX6) mRNA, complete cds.
GenBankGU4616040.0GU461604.1 Medicago truncatula KNOX6 variant a mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491125.10.0homeobox protein SBH1-like isoform X1
RefseqXP_012568587.10.0homeobox protein SBH1-like isoform X2
SwissprotP466081e-118HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1S2XLD90.0A0A1S2XLD9_CICAR; homeobox protein SBH1-like isoform X1
TrEMBLA0A1S3DYL70.0A0A1S3DYL7_CICAR; homeobox protein SBH1-like isoform X2
STRINGXP_004491125.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-105KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]