PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568850.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 168aa MW: 18646.8 Da PI: 5.2311

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.3	1.5e-44	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+ XP_012568850.1 12 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPNQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELD 106 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_012568850.1 107 ATNA 110 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.862	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-44	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MIMSSSSYTN SPCAACKFLR RKCMPDCIFA PYFPPEEPQK FANVHKIFGA SNVSKLLNEV 60 QPNQREDAVN SLAYEAEARI KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLIRYTCTDI 120 TNQDSRRIGE EGGSSLGQSP HEGFYYPSTP WNNDPLGDGY HTGGDNTM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-66	9	120	8	119	LOB family transfactor Ramosa2.1
5ly0_B	8e-66	9	120	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568850.1	1e-126	LOB domain-containing protein 25-like isoform X1
Swissprot	Q8L8Q3	1e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S3DZF3	1e-124	A0A1S3DZF3_CICAR; LOB domain-containing protein 25-like isoform X1
STRING	XP_004491980.1	1e-123	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-70	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]