PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568891.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WOX

Protein Properties

Length: 272aa MW: 31625.9 Da PI: 8.6585

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.8	2.5e-20	46	106	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe + +ps+e+++e+++ l +++e++V++WFqNrR + k+ XP_012568891.1 46 RQRWTLTPLQLQILERIFEAgTGTPSKEKIKEITADLskhgQISETNVYNWFQNRRSRSKR 106 89***************99************************************97 PP
2	Wus_type_Homeobox	95.7	3.8e-31	45	108	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWt tp Q++iLe+++++G+ tP+ke+i++ita L+++G+i+++NV++WFQNr++R+++kq XP_012568891.1 45 SRQRWTLTPLQLQILERIFEAGTGTPSKEKIKEITADLSKHGQISETNVYNWFQNRRSRSKRKQ 108 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-17	39	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.597	42	107	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-18	43	109	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-13	44	111	IPR001356	Homeobox domain
CDD	cd00086	2.48E-12	46	108	No hit	No description
Pfam	PF00046	4.0E-18	46	106	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MANPEALRWI DNIPITMNYG VFSRSTMGTH DNKKCRVNQR SDQDSRQRWT LTPLQLQILE 60 RIFEAGTGTP SKEKIKEITA DLSKHGQISE TNVYNWFQNR RSRSKRKQQS AAPSSVNAES 120 EVENEVDSND KKIILDEFVA PQPAEKLSFQ NLQVCSDLQY FNPESDDSLR PARHFDHGPV 180 FDGMLSNSSM LLTYIVPSFF PCFDTLTCVG HWTRLRSEIP PPWKKFYNRH RQFVKGCLPL 240 RRYRLHKRVY MEDCGLPSLV IHNTACYEPW PI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	RRSRSKRKQ
2	100	105	RSRSKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568891.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027188655.1	1e-172	WUSCHEL-related homeobox 8-like, partial
TrEMBL	A0A3Q7YDW2	1e-171	A0A3Q7YDW2_CICAR; WUSCHEL-related homeobox 8-like
STRING	XP_004492094.1	1e-89	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-25	WUSCHEL related homeobox 13