PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568958.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 212aa MW: 24279.6 Da PI: 8.5816

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.7	2.5e-25	41	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + e++ r + r gCka++ k+ek+gkw+v++++++HnH+l XP_012568958.1 41 KFYFEYARRVGFAVRVMQRRRSGIDGRTLARRLGCNKQGFSPNNKGTLGLEKKLRHSAREGCKATILFKLEKSGKWVVSRFVKDHNHPLI 130 6********************************************9**************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-23	41	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MDKGNEADHT CLEKSTSIFD GVEVQEPYVG MEFDSEEAAK KFYFEYARRV GFAVRVMQRR 60 RSGIDGRTLA RRLGCNKQGF SPNNKGTLGL EKKLRHSARE GCKATILFKL EKSGKWVVSR 120 FVKDHNHPLI ATANGFNSAD DKDKKIAELT IELERQDELC AAYREKLMSF INNVEEETVE 180 MSTRIQLIIE NVRRAESELQ KCSQNSKPRY CT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568958.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC157777	1e-134	AC157777.2 Medicago truncatula chromosome 7 clone mth2-25c14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568958.1	1e-158	protein FAR1-RELATED SEQUENCE 12
Swissprot	Q9SZL8	4e-23	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S3E0I2	1e-157	A0A1S3E0I2_CICAR; protein FAR1-RELATED SEQUENCE 12
STRING	XP_007140743.1	1e-127	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-73	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]