PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012568970.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 523aa MW: 57239 Da PI: 6.8284

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	365	412	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_012568970.1 365 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 412 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.49E-10	359	416	No hit	No description
SuperFamily	SSF47459	6.54E-17	359	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	361	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-16	361	429	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	365	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	367	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MENQFFSNNA NVPPQLHFNP PSIPPNWQSI SPTSSMDVQV SILNCVSSQQ HNQDCFYTQT 60 PTWENSTTDH HAVHQFDSAL SSMVSSPAAS NSNMSNDNFA IRELIGKLGN IGGNCNSDNE 120 ISISPHSKTL IASSSYINSN NTSCYNTPLN SPPKLNHSLG KSMAMNSTVA EFSADPGFAE 180 RAAKFSCFGS RSFNGRKNGE LSQSQRSTTP LIENGKLSRV SSSPSLKALG SQIGIQENMN 240 NNSPQLNDQM ELNNSQEEST ISQHVPNVNS RKRKVSSKGK AKETSTSINP SIACEAVEDL 300 NAKRIKQNEG ENNENGQVKA EEESKGGTNS NNGGDDKQNK SNTKPPEAPK DYIHVRARRG 360 QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQRQVEFLSM 420 KLASVNTRVD FSIESLISKD IFQSNNSLAH PIFPLDSSAP SFYGQQHQQN PAIHNNISNG 480 TVTHNSVDPL DNGLCQNLSM HLASLNGFHE PGSQAQINYP YES

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MENQFFSNNA NVPPQLHFNP PSIPPNWQSI SPTSSMDVQV SILNCVSSQQ HNQDCFYTQT  60
PTWENSTTDH HAVHQFDSAL SSMVSSPAAS NSNMSNDNFA IRELIGKLGN IGGNCNSDNE  120
ISISPHSKTL IASSSYINSN NTSCYNTPLN SPPKLNHSLG KSMAMNSTVA EFSADPGFAE  180
RAAKFSCFGS RSFNGRKNGE LSQSQRSTTP LIENGKLSRV SSSPSLKALG SQIGIQENMN  240
NNSPQLNDQM ELNNSQEEST ISQHVPNVNS RKRKVSSKGK AKETSTSINP SIACEAVEDL  300
NAKRIKQNEG ENNENGQVKA EEESKGGTNS NNGGDDKQNK SNTKPPEAPK DYIHVRARRG  360
QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQRQVEFLSM  420
KLASVNTRVD FSIESLISKD IFQSNNSLAH PIFPLDSSAP SFYGQQHQQN PAIHNNISNG  480
TVTHNSVDPL DNGLCQNLSM HLASLNGFHE PGSQAQINYP YES

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568970.1	0.0	transcription factor bHLH62 isoform X2
TrEMBL	A0A1S3DZR6	0.0	A0A1S3DZR6_CICAR; transcription factor bHLH62 isoform X2
STRING	XP_004492265.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	6e-96	bHLH family protein