PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569212.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WOX
Protein Properties Length: 259aa    MW: 28771.4 Da    PI: 7.7053
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.61.6e-162585257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+t+++eq+ +Le+ F++   +p +ee  ++ k l    ++ +++V++WFqNrR + ++
  XP_012569212.1 25 RSRWTPKPEQILILESIFNSgMVNPPKEETIKIRKLLekfgNVGDANVFYWFQNRRSRSRR 85
                    89*****************99*************************************997 PP
2Wus_type_Homeobox105.82.7e-342487265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQi iLe++++sG+++P+kee+ +i++ Le++G+++d+NVfyWFQNr++R+r++q
     XP_012569212.1 24 VRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQ 87
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-141992IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-91993IPR009057Homeodomain-like
PROSITE profilePS5007111.7742186IPR001356Homeobox domain
SMARTSM003892.8E-72390IPR001356Homeobox domain
PfamPF000463.2E-142585IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEDKKQNDPN NTPNQHGSEK NEPVRSRWTP KPEQILILES IFNSGMVNPP KEETIKIRKL  60
LEKFGNVGDA NVFYWFQNRR SRSRRRQRQM QQATLEQRNQ MLMKQPQQHV DDGAHANIAC  120
DVVQKMGFGG SSSSLNDSLG SSSCVAVQQG MDGFFSLSSQ MPFHGIHQTL AGSSLFSPPL  180
SPNFNYQPGY GGSSVTGMIT VFINGIATEV QAGPIDMKTV FGEDVMLLHS SGVPLPTNEF  240
GFFIQSLQHG ESYFLVSKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0528461e-176BT052846.1 Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569212.10.0WUSCHEL-related homeobox 11 isoform X1
SwissprotQ6X7J31e-66WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A1S3E0C80.0A0A1S3E0C8_CICAR; WUSCHEL-related homeobox 11 isoform X1
STRINGXP_004493236.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-32WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]