PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569388.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 661aa    MW: 73388.3 Da    PI: 6.4448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000424865231355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  XP_012569388.1 486 RQLIQDRIKELRELVPSgA------KCSIDSLLERTIKHMLFLQ 523
                     67799************77......7777779999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-20288IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.544473522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MSYHAYSLGE GIVGQVAVSG KHRWICGDNQ VTSSGLSIDF ADGWQSQFSA GIRTIVVVPV  60
VPLGVVHLGS LIKVNEDIEV VNHIRNIFLT TQNYSIDHIP SQIQSSLKIP LSQSDVLEEK  120
LSSDITPACL QNTARTMRNK TVDVLMPLQC SARNNNTTHS AYWEIGDNIV KHEGPKLCSD  180
MSSILLQSMS CMINVEHQKF GAIKPLSGRE CESEQNLASF SNNLAKNNVG VNDLIHQSEK  240
AKVDSACFPS VFLDADVCES DQLHYVDTYQ KAMLNIARPL DENSHRHTKN LEFRTEPCDT  300
DASYTLLKFP AGYELHEALG PASLKGSKYF DCLAQVNQDM EIVDMPDEIN TTQLTSEFPP  360
EHLLEAMVAN ICHSNNDVNY SKLSFCRSMQ SAMSSGKTPE ASIHNVHTIN VEGYSNSMDH  420
PSLVREEKYH CLSSSSGISG MISSKGVTSK YHSACSEQLE RSSEPSKNSK KRARPGESCR  480
PRPRDRQLIQ DRIKELRELV PSGAKCSIDS LLERTIKHML FLQGITMHAD KLTKFSDTKS  540
KLHHMETDIV GSSSCEQGSS WAVEVGGDLK VHSILVENLS KKGHLLIEML CEECSHFLEI  600
AEAIKSLGLK ILKGATKVRD EKIWICFIVE GENNRNVHSL DVLWPLVQIL QSKRCASTIT  660
D
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569388.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-37AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569388.10.0transcription factor EMB1444-like isoform X2
TrEMBLA0A1S3E1R30.0A0A1S3E1R3_CICAR; transcription factor EMB1444-like isoform X2
STRINGXP_004493767.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-112conserved peptide upstream open reading frame 7