PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012569543.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 254aa MW: 29004.2 Da PI: 8.6643

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012569543.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	109	2.2e-34	111	168	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v +tYeg+H+h+ XP_012569543.1 111 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKHVERSLSDPSIVMTTYEGKHTHP 168 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	5.3E-97	6	254	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	3.3E-35	95	170	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-29	102	170	IPR003657	WRKY domain
PROSITE profile	PS50811	32.294	105	170	IPR003657	WRKY domain
SMART	SM00774	1.6E-40	110	169	IPR003657	WRKY domain
Pfam	PF03106	1.5E-26	111	168	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEKGRANMND YAIGSSYDEY SFPSVFDLSE EKSSCSDQVF NNHQQPATPN SSSISSTSSE 60 AINDENTKTL HDQPHNIHKP LKQLKVKKTN EKRQREARIA FMTKSEVDHL EDGYRWRKYG 120 QKAVKNSPFP RSYYRCTSVS CNVKKHVERS LSDPSIVMTT YEGKHTHPNP IMSRSSAGII 180 SSSECTTNYV SQYYNQHRQQ LIFNTLSSLG FPSKNTNNIA ATFPQEKPLC NNNSRVRDYG 240 LLEDVVPSHM FKEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	103	170	10	77	Probable WRKY transcription factor 4
2lex_A	2e-27	103	170	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012569543.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146334	1e-131	BT146334.1 Medicago truncatula clone JCVI-FLMt-7D17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027188124.1	1e-180	WRKY transcription factor 23
Swissprot	O22900	5e-63	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A3Q7X317	1e-179	A0A3Q7X317_CICAR; WRKY transcription factor
STRING	XP_004494936.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	4e-59	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]