PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569757.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 254aa    MW: 29617.4 Da    PI: 7.0193
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.4e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll+++vk++G g+W+++a+  g++R +k+c++rw +yl
   XP_012569757.1 22 KGPWTSEEDKLLIEYVKLHGEGRWNSVASLAGLRRNGKSCRLRWVNYL 69
                     79********************************************97 PP
2Myb_DNA-binding32.91.5e-1077115347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        T++E+ +++++++    + W+tIar ++ gRt++++k++w+++
   XP_012569757.1  77 QITPQEESIILELHA----R-WSTIARNLP-GRTDNEIKNYWRTH 115
                      557777777777765....6.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8431773IPR017930Myb domain
SuperFamilySSF466892.96E-2620112IPR009057Homeodomain-like
SMARTSM007172.2E-162171IPR001005SANT/Myb domain
PfamPF002494.6E-182269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-242376IPR009057Homeodomain-like
CDDcd001671.12E-112469No hitNo description
SMARTSM007171.4E-774118IPR001005SANT/Myb domain
PROSITE profilePS5129414.12774120IPR017930Myb domain
PfamPF002494.2E-875115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2077119IPR009057Homeodomain-like
CDDcd001672.06E-879116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MYSGVIEGNT RWCVIEEDGW RKGPWTSEED KLLIEYVKLH GEGRWNSVAS LAGLRRNGKS  60
CRLRWVNYLR PDLKKGQITP QEESIILELH ARWSTIARNL PGRTDNEIKN YWRTHFKKKA  120
KKTADAADKT KKVSLRKQNQ QQIKQQQQIQ QQQQIQYNFD MKGILELLEE NEYSVPSTSQ  180
ETQEMVTMCP ETTEQHGYFY SMLNGNCNVY ADESSNEEIL WDGLWNLDDV LGNSMQLMLQ  240
AKPTNVHNLV TPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24221207108B-MYB
1h8a_C1e-232212027128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569757.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1448076e-87AC144807.23 Medicago truncatula clone mth2-9j13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495255.11e-159transcription factor WER-like
TrEMBLA0A1S2XVQ41e-157A0A1S2XVQ4_CICAR; transcription factor WER-like
STRINGXP_004495255.11e-158(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-66myb domain protein 305