PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012569912.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 677aa MW: 76001.4 Da PI: 9.3651

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012569912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.2e-07	128	170	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE ++l d+++++ + + Ia +++ Rt +++k+r+++ XP_012569912.1 128 KWTKEETDQLFDLCERFNLR-FIVIADRFPSSRTVEELKDRYYS 170 8****************9.*******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	1.0E-29	101	175	IPR032563	DAMP1, SANT/Myb-like domain
SMART	SM00717	5.6E-7	125	174	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.02E-6	126	172	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-6	127	171	IPR009057	Homeodomain-like
CDD	cd11658	1.15E-17	129	171	No hit	No description
Pfam	PF05499	1.9E-7	284	348	IPR008468	DNA methyltransferase 1-associated 1
Pfam	PF07281	1.3E-7	480	617	IPR025929	Insulin-induced protein family

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MDVKDILGLP NISIPVHEKN SPPQKDSQRK PDGISREVYA LTGGLAPLMP AVDLSLLKQR 60 PPSDGKVIWQ WLPFTNSARK DNLRLYHWVQ VVNDAPPTGD YSFAKYNKSV DTTRYTDEEY 120 EKYLANPKWT KEETDQLFDL CERFNLRFIV IADRFPSSRT VEELKDRYYS VSQAILIARN 180 PSSGDVAVHP LVKVLAEAKR IVESRIMTKV ARESELVVAS NAGADITERA NPGETVSPSN 240 MHLPPTVVPS PITTDNASTI ASLRMLHVYL RTYALEQMVQ SASSSAGLRT IKRIDQTLQE 300 LGVNLKPRVP TKAVCAEHLE LRKEILTLLN LQKQLQNKEA EGSTFRDGSH CETTGAPKHL 360 HRGGDQDQTF VPDTTSSGGE RIGKRDKKRK APGRHSETPS SPAQSKRQRK LKASDLYGMK 420 LFSCKNICLT KYTTKRSNMQ YLVSSLQTYT LHRRSVLKPP LAAKQNNQTS VRTSWSSVSL 480 SLFGTGFFLG PLLDGLHSRV NLVVYKSGSI HIGPLHTNIW VPPLLGLFYC SVGLLQLYLD 540 ERVLNKVQHG SLAKTISSLV LLALFIELSA ELYKAGISDN IEAYILFGAA EFMWFLLDRT 600 WPGFTLSCIV GFACPLAEIL LIKFLHLWYY PQANIEIFGE GLVTWTLTCY FVYTPFLINL 660 SRWFRSVYAA QIEDCAS

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MDVKDILGLP NISIPVHEKN SPPQKDSQRK PDGISREVYA LTGGLAPLMP AVDLSLLKQR  60
PPSDGKVIWQ WLPFTNSARK DNLRLYHWVQ VVNDAPPTGD YSFAKYNKSV DTTRYTDEEY  120
EKYLANPKWT KEETDQLFDL CERFNLRFIV IADRFPSSRT VEELKDRYYS VSQAILIARN  180
PSSGDVAVHP LVKVLAEAKR IVESRIMTKV ARESELVVAS NAGADITERA NPGETVSPSN  240
MHLPPTVVPS PITTDNASTI ASLRMLHVYL RTYALEQMVQ SASSSAGLRT IKRIDQTLQE  300
LGVNLKPRVP TKAVCAEHLE LRKEILTLLN LQKQLQNKEA EGSTFRDGSH CETTGAPKHL  360
HRGGDQDQTF VPDTTSSGGE RIGKRDKKRK APGRHSETPS SPAQSKRQRK LKASDLYGMK  420
LFSCKNICLT KYTTKRSNMQ YLVSSLQTYT LHRRSVLKPP LAAKQNNQTS VRTSWSSVSL  480
SLFGTGFFLG PLLDGLHSRV NLVVYKSGSI HIGPLHTNIW VPPLLGLFYC SVGLLQLYLD  540
ERVLNKVQHG SLAKTISSLV LLALFIELSA ELYKAGISDN IEAYILFGAA EFMWFLLDRT  600
WPGFTLSCIV GFACPLAEIL LIKFLHLWYY PQANIEIFGE GLVTWTLTCY FVYTPFLINL  660
SRWFRSVYAA QIEDCAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	2e-20	100	171	4	79	DNA methyltransferase 1-associated protein 1
4iej_A	2e-20	100	171	4	79	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012569912.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012569912.1	0.0	SWR1-complex protein 4
Swissprot	Q8VZL6	1e-179	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A1S3E296	0.0	A0A1S3E296_CICAR; SWR1-complex protein 4
STRING	AES61616	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4975	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-172	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]