PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569986.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 356aa    MW: 39187 Da    PI: 7.0354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10205249554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + v+Y+k L
  XP_012569986.1 205 HSIAERLRRERIAERMKALQELVPSiN------KTDKAAMLDEIVDYVKFL 249
                     99***********************77......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-16198259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-11198254No hitNo description
PROSITE profilePS5088816.729200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15202260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8205249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-12206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAGNCSSEGL GDDFFEQILA VPESGYGRNN NNSSNRGIVV DDHVLQLGST TNLRSGGMQL  60
PLGLNLEQSH HGFLRHQDTT RFVENVVDVE GNITNNNNHH RHLRLHDINT TSNSSPSSTL  120
HLDRDSMHMR GLFSTFGQLH TPTHAQPVRP MLPSPPPQPQ LHLHHQQHQQ FQSQAPNPTS  180
VAAMPQPPGI RPRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPSI NKTDKAAMLD  240
EIVDYVKFLR LQVKVLSMSR LGGAGAVAQL VADVPVSAVE GEDVEGGANQ QAWTKWSNDG  300
TEQQVAKLME EDVGAAMQLL QSKALCIMPI SLASAIFRMP QSDSSTIIKP ESNNHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569986.10.0transcription factor UNE12-like isoform X2
SwissprotO227681e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S3E4L30.0A0A1S3E4L3_CICAR; transcription factor UNE12-like isoform X2
STRINGXP_004496017.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.38e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]