PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012570124.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YA

Protein Properties

Length: 183aa MW: 20258.7 Da PI: 9.6373

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012570124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103	2.8e-32	88	144	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk+ +++rkpylheSRh hAl+R+Rg+gGrF XP_012570124.1 88 EEPVFVNAKQYHGILRRRQSRAKAESEKKV-ARNRKPYLHESRHLHALKRARGCGGRF 144 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.4E-36	86	147	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.645	87	147	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-27	89	144	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.7E-23	90	112	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	92	112	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.7E-23	121	144	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MQPISANGIS HAGIDTQIVQ YAAHPPLGTG HAMVPPAYPY PDPYYRSIFA PYDAQPYPPQ 60 PYGGHPMANL QLMGIQHAGV PLPTDAVEEP VFVNAKQYHG ILRRRQSRAK AESEKKVARN 120 RKPYLHESRH LHALKRARGC GGRFLNSKKN ENQQDEVASA DNSQSNINLN SDRNDLAPSD 180 KTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-21	87	152	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012570124.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146024	0.0	BT146024.1 Medicago truncatula clone JCVI-FLMt-11O7 unknown mRNA.
GenBank	JQ918271	0.0	JQ918271.1 Medicago truncatula nuclear transcription factor Y subunit A6 (NF-YA6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486451.1	1e-134	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_004486452.1	1e-134	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	1e-61	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1S2XAR6	1e-133	A0A1S2XAR6_CICAR; nuclear transcription factor Y subunit A-7 isoform X1
STRING	XP_004486451.1	1e-134	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-48	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]