PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012570135.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

M-type_MADS

Protein Properties

Length: 231aa MW: 26117.8 Da PI: 9.7909

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012570135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.2	4.4e-23	16	64	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n+sn qvtfskRr g++KKA+EL++LC+aev +i+fs+ k++ + XP_012570135.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGAEVVLIVFSPGEKVFSF 64 5689***************************************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.558	8	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-33	8	67	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.45E-36	9	78	No hit	No description
SuperFamily	SSF55455	1.96E-28	9	84	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-19	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-24	18	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-19	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-19	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSTGRKSRGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGAEV VLIVFSPGEK 60 VFSFGHSNVD TIIDRYLTRV PLQHIGTMQF IEAHRNANVC GLNETLTQAN NQLDAEKRHG 120 DELSHLRKTT EAQFWWACPI DVMSRAQLEL FKKALEELKK LVAQHADRIM IQGAPPQTLQ 180 FFVGNASTSN NAIHPHQQQQ IQMYPPQFFQ NPIMQPHWSG FNNTGGGYGS T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	3e-15	9	76	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	3e-15	9	76	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	3e-15	9	76	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	3e-15	9	76	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3kov_B	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3kov_I	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3kov_J	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3mu6_A	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3p57_A	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3p57_B	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3p57_C	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3p57_D	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3p57_I	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
3p57_J	3e-15	9	76	1	68	Myocyte-specific enhancer factor 2A
6bz1_A	4e-15	9	76	2	69	MEF2 CHIMERA
6bz1_B	4e-15	9	76	2	69	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012570135.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012570135.1	1e-175	agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	7e-63	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A1S3E312	1e-174	A0A1S3E312_CICAR; agamous-like MADS-box protein AGL62
STRING	XP_004496797.1	1e-150	(Cicer arietinum)
STRING	XP_004496858.1	1e-150	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-57	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]