PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570175.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 763aa    MW: 84064.7 Da    PI: 5.7576
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.7e-2168123156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k
  XP_012570175.1  68 KKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 123
                     688999***********************************************999 PP
2START171.45.7e-542744972206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlev 84 
                     la++a++el+k+a+ ++p W ks     +++n +e+ + f++  +     +  ea r+sg+v+ ++  l+e+l+d ++    ++ ++a+a  l+v
  XP_012570175.1 274 LALAAMEELLKMAQTDSPIWIKSLdgerDILNHEEYARLFSSCVGskpngFVAEATRESGIVIINSLALMETLMDANRyadMFQSMIARAINLDV 368
                     6899************************************66444899999**************************88888888888******* PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     +s g      ga++lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS++   +  + ++++ +++lpSg+++++++ng+skvtw+eh+++
  XP_012570175.1 369 LSGGiggtrnGAIHLMHAELQLLSPLVPvRHVRFLRFCKQHAEGVWAVVDVSIEIGHDAANGQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEY 463
                     ******************************************************99999999********************************* PP

                     -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++h+l+r+lv sg  +ga +w atlqrqce+
  XP_012570175.1 464 DESVVHQLYRPLVISGFGFGAHRWIATLQRQCEC 497
                     ********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.13E-2054125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2155125IPR009057Homeodomain-like
PROSITE profilePS5007117.76765125IPR001356Homeobox domain
SMARTSM003894.3E-1966129IPR001356Homeobox domain
CDDcd000866.90E-1967125No hitNo description
PfamPF000461.6E-1868123IPR001356Homeobox domain
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PROSITE profilePS5084839.624264500IPR002913START domain
SuperFamilySSF559611.98E-29267497No hitNo description
CDDcd088755.01E-114268496No hitNo description
SMARTSM002344.7E-36273497IPR002913START domain
PfamPF018521.2E-45274497IPR002913START domain
SuperFamilySSF559613.63E-22525757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MVCEYDYEIH QRKMEGQSEI GLTGESLDTN NMIGRMREDE YESRSGSDNF EGISGDDQDA  60
GDEQPKRKKR YHRHTPNQIQ ELESFFKECP HPDEKQRLDL SKRLGLENKQ VKFWFQNRRT  120
QMKTQLERHE NIMLRQENEK LRGENTMMKE AMSNPVCNNC GGPAIPGQIL FEEHQIRIEN  180
ARLKDELNRI CALTNKFLGK PISSLASPMA LQTSNSGLEL GIGRNGMGGS SSLGASLPMG  240
LDLGDSAMPG MRSPMGLMGN SNEIQLERSV LIDLALAAME ELLKMAQTDS PIWIKSLDGE  300
RDILNHEEYA RLFSSCVGSK PNGFVAEATR ESGIVIINSL ALMETLMDAN RYADMFQSMI  360
ARAINLDVLS GGIGGTRNGA IHLMHAELQL LSPLVPVRHV RFLRFCKQHA EGVWAVVDVS  420
IEIGHDAANG QPFISCRRLP SGCIVQDMPN GYSKVTWIEH WEYDESVVHQ LYRPLVISGF  480
GFGAHRWIAT LQRQCECLAI LMSSSISTDD HTALSQAGRR SMLKLAQRMT SNFCSGVCAS  540
SARKWDTLQM GTLSDDMRVM TRKNVDDPGE PPGIVLSAAT SVWMPVSRQR LFDFLRDERL  600
RSEWDILSNG GPMQEMVHIA KGQGQGNCVS LLRANAVNAN DSSMLILQET WMDTSCSVVV  660
YAPVDAQSLN VVMSGGDSAY VALLPSGFAI LPDGNSSDYG ASNGTLQKGG SIGSDGGGSL  720
LTVGFQILVN SLPTAKLTME SVDTVNNLIS CTIQKIKAAL RVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494940.0AC149494.4 Medicago truncatula clone mth2-116m7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570175.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1S3E3500.0A0A1S3E350_CICAR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
STRINGXP_004496593.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]