PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012570457.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

G2-like

Protein Properties

Length: 253aa MW: 29415.2 Da PI: 6.5034

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012570457.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.8	2.4e-28	172	226	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt+eLHe F+ v++LGG+e+A Pk+ile+m+++ Lt++hvkSHLQkYR+ XP_012570457.1 172 KRRLRWTKELHETFIMIVNRLGGPENAKPKAILEMMGLDVLTISHVKSHLQKYRS 226 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.228	169	229	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-26	170	227	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-15	171	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-21	172	226	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-8	174	225	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MSINQLESQH QIFEPYNIVT PLEDIPTIIH ESIANEAYMN FQSQQHHQHQ IDIPLWTNEF 60 SMTTTRDSPF LFCHDSKLVF ESLMSNSEGD DSFSSSEKCS EFHYCSHNKQ ICEHLSQQHK 120 KVLECDDPTD QKSHEVSFQK TQKESCTKQS SPCDLAFATP SNYDFEITEK GKRRLRWTKE 180 LHETFIMIVN RLGGPENAKP KAILEMMGLD VLTISHVKSH LQKYRSTFHT HKSLNGNLLL 240 YVVLFLFFRG KDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	171	226	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	171	226	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	171	226	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	171	226	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	171	226	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	171	226	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	171	226	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	171	226	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012570457.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012570457.2	1e-178	myb family transcription factor PHL5-like
TrEMBL	A0A1S3E3T6	1e-177	A0A1S3E3T6_CICAR; myb family transcription factor PHL5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14490	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-19	G2-like family protein