PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570567.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 242aa    MW: 28922.6 Da    PI: 7.1648
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-17131051100
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv +    l+++ l+lp++f++++++  e s  +tl  ++  +We++    k+++ +++++GW++F++   +  g f+vFk+d+ s+f   v+
  XP_012570567.1  13 FFKVIVETT-LQTNELMLPRSFVKKYEK--ELSNPVTLILPNDDKWEINW--IKRDNDVWFQNGWEKFAQHYSMSHGHFLVFKFDRGSKF--QVM 100
                     677775555.55556***********84..577889999***********..999999*************************9987888..9*9 PP

                     EE-SS CS
              B3  96 vfrks 100
                     +f+ks
  XP_012570567.1 101 IFDKS 105
                     99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-229105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-2210105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3812105IPR003340B3 DNA binding domain
CDDcd100171.13E-1612103No hitNo description
PfamPF023622.2E-1313104IPR003340B3 DNA binding domain
SMARTSM010199.9E-1713105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSLQINVDRK SSFFKVIVET TLQTNELMLP RSFVKKYEKE LSNPVTLILP NDDKWEINWI  60
KRDNDVWFQN GWEKFAQHYS MSHGHFLVFK FDRGSKFQVM IFDKSALEID YWSITTSSRN  120
DGERNNQNHE DVEKCENDNN YTEISVESER PRFLSPQPHK RMKTNYGINR ESSLKGKNYS  180
NDIEDNKRRI VALEETQRTA MNFRFDNPSF IRPLHPSYLE NVVTIYFMLF RNLDPRIIME  240
AL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570567.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189403.11e-123uncharacterized protein LOC101507713
TrEMBLA0A3Q7XQ001e-121A0A3Q7XQ00_CICAR; uncharacterized protein LOC101507713
STRINGAES970513e-83(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-23B3 family protein