PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570632.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 600aa    MW: 67014.9 Da    PI: 4.5852
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.51.8e-1362236002374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPil 91 
                     ++lL+ecA a+s+g+  +a+a++  l++++s +gdp +R+aay++e+Laar+a+s++ +ykal+++e ++         ++laa+++++ev+P++
  XP_012570632.1 223 KQLLYECASALSDGNEVKASAMIDDLRQMVSIQGDPSERIAAYMVEGLAARMASSGKCIYKALKCKEPPSXXxxxxxXXDRLAAMQILFEVCPCF 317
                     589****************************************************************998878999999**************** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                     kf++++aN aI eav+ +++vHiiDfdi+qG Q+++L+q+LasRp++pp +R+Tgv++pes+  s   l+++g+rL+k+Ae lg+pfef++ va+
  XP_012570632.1 318 KFGFIAANGAISEAVKDDKKVHIIDFDINQGSQYITLIQTLASRPGKPPYVRLTGVDDPESVqrSVGGLSTIGQRLEKLAEVLGLPFEFRA-VAS 411
                     ************************************************************9988999************************.799 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     + + +++++L+++pgE+l+Vn+++qlh++ desvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+a+lpres
  XP_012570632.1 412 SSSIVTPSMLNCRPGESLIVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDVNTNTSPFLPRFVEAYNYYSAVFESLDATLPRES 506
                     *********************************************************************************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++r++vEr++l+r+ivnv+aceg++r+er e ++kWr+r+++aGF++ p+s+++ + +k l+r++ +  y+++ee g+l +gW+d++L+++SaW+
  XP_012570632.1 507 QDRVNVERQCLARDIVNVIACEGEDRIERYEVAGKWRARMRMAGFTSSPMSTNVKEAIKELIRQYCD-KYKIKEEMGALHFGWEDKNLIVASAWK 600
                     ******************************************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.046196581IPR005202Transcription factor GRAS
PfamPF035146.3E-134223600IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MSLIISPELA DTSYRNAKLY SLKGTDVTPG LSSHNFAPDK HKSMYMNDSY SSESYEKYFR  60
DSPTEELIEP SSSGISGNSV HADGDSPYQL RASSGASMVT DNATDTYISS TRHCDAYQSN  120
FESDFLENES PDCFEFDGEM RLKLQELERA LLGDNNDECD DDEENIFRTV QSMEIDPDFA  180
DCANPIQNML SHDSPKESLS SESNLSSSSS TKEISQNFPR TPKQLLYECA SALSDGNEVK  240
ASAMIDDLRQ MVSIQGDPSE RIAAYMVEGL AARMASSGKC IYKALKCKEP PSXXXXXXXX  300
XDRLAAMQIL FEVCPCFKFG FIAANGAISE AVKDDKKVHI IDFDINQGSQ YITLIQTLAS  360
RPGKPPYVRL TGVDDPESVQ RSVGGLSTIG QRLEKLAEVL GLPFEFRAVA SSSSIVTPSM  420
LNCRPGESLI VNFAFQLHHM RDESVSTVNE RDQLLRMVKS LNPKLVTVVE QDVNTNTSPF  480
LPRFVEAYNY YSAVFESLDA TLPRESQDRV NVERQCLARD IVNVIACEGE DRIERYEVAG  540
KWRARMRMAG FTSSPMSTNV KEAIKELIRQ YCDKYKIKEE MGALHFGWED KNLIVASAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6722859925378Protein SCARECROW
5b3h_A3e-6722859924377Protein SCARECROW
5b3h_D3e-6722859924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570632.10.0LOW QUALITY PROTEIN: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1S3E4A90.0A0A1S3E4A9_CICAR; LOW QUALITY PROTEIN: scarecrow-like protein 1
STRINGXP_007161385.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]