PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571134.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 347aa    MW: 38945.6 Da    PI: 6.521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-08252292954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++++P       +K++ a++L +A +Y+k L
  XP_012571134.1 252 ARQRRERISERIRVLQKIVPGG-----TKMDTASMLDEAANYLKFL 292
                     69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.256243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-12245301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-14247304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5252292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-4265297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDSLIWNDSQ QLVVNNNIPN LWNTQPQDLE RDYSTSSLLN YQMKDIITMI PNTNSGAGIS  60
CEENLIFQSC PSLSANYVQD FNMIHQQHLI NGTQNNKATK ISLESLDCLL SATNSYNTDT  120
SVEDDGISMI FSDCRKNLLN LSYYGSAVSS AESQSNTSNQ SSSDQEKPPK SKKPRWDNKC  180
PGSSNINFQQ PNSSTLSSTI EEPDPEAIAQ MKEMIYRAAA FRPVMNLGLE EVMEKPKRKN  240
VKISKDPQTV AARQRRERIS ERIRVLQKIV PGGTKMDTAS MLDEAANYLK FLRSQVKALE  300
NLGNKIDAMN NNFPPTSIAF SFNPLNPMQT HFPIQNSNNH NIQYSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487228.10.0transcription factor bHLH87
RefseqXP_027191748.10.0transcription factor bHLH87
TrEMBLA0A1S2XCJ50.0A0A1S2XCJ5_CICAR; transcription factor bHLH87
STRINGXP_004487228.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-58bHLH family protein