PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571399.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family E2F/DP
Protein Properties Length: 376aa    MW: 42511.1 Da    PI: 6.1932
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.63.7e-27109174171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL+llt+kf++l++ +++g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  XP_012571399.1 109 RYDSSLGLLTKKFVSLIQDAKDGTLDLNQTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 174
                     6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-29106175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-35109174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.32E-17109172IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.9E-25111174IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.75E-31185292No hitNo description
SuperFamilySSF1440747.59E-25185291No hitNo description
PfamPF164212.3E-22190289IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSTTTPSGED RIEPPLIPHH FSQFKFDLCH SPSPHFTILP LSQRNEINNV KLHACNVEAF  60
PTHQSNTVNL PPSIQTEPIQ RRKLNGKSKV SRNAKSAKSP NSTAVNNCRY DSSLGLLTKK  120
FVSLIQDAKD GTLDLNQTAE VLEVQKRRIY DITNVLEGIG LIEKTSKNHI RWKGCDGLGP  180
RELEDQVNAL KAEVENLYDE ECKLEECISK KKELIQNLEK GENSQKYLFF TKEDILTLPC  240
FQNKQLIAIK APKASFIEVP DPDEELGFHQ RQYRMIVRSA TGPITLYLLN KHDHKFEGVS  300
VKQAKLMDPS WSSNNLRMED MEILESQGCE KNPSGNLGSL GSEAFGIQQI TPTDFDVDND  360
YWFQSDPNVG LTQLWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A6e-25108175674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571399.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571399.10.0transcription factor E2FC isoform X2
TrEMBLA0A1S3E7Q10.0A0A1S3E7Q1_CICAR; transcription factor E2FC isoform X2
STRINGXP_004500945.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.23e-90E2F/DP family protein