PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571593.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 483aa    MW: 54509.3 Da    PI: 6.81
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.7e-1889132347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rWT++E++l++++  ++G+g+Wk+I+ +m  +Rt+ q+ s+ qky
   XP_012571593.1  89 RWTEDEHKLFIEGLDKHGKGDWKSISMHMR-TRTPTQVASHAQKY 132
                      8*****************************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.79882137IPR017930Myb domain
SuperFamilySSF466891.22E-1585138IPR009057Homeodomain-like
SMARTSM007172.5E-1286135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1088133IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1488135IPR006447Myb domain, plants
PfamPF002492.3E-1589132IPR001005SANT/Myb domain
CDDcd001671.15E-1289133No hitNo description
Gene3DG3DSA:1.10.10.2001.4E-19235312IPR017856Integrase, N-terminal zinc-binding domain-like
SuperFamilySSF756251.07E-55236482IPR029072YebC-like
HamapMF_0069321.287236483IPR002876Transcriptional regulator TACO1-like
PfamPF017098.9E-59240480IPR002876Transcriptional regulator TACO1-like
Gene3DG3DSA:3.30.1270.109.1E-20316366IPR026563Transcriptional regulator TACO1-like, domain 2
Gene3DG3DSA:3.30.70.9802.1E-10367441IPR026564Transcriptional regulator TACO1-like, domain 3
Gene3DG3DSA:3.30.1270.109.1E-20457481IPR026563Transcriptional regulator TACO1-like, domain 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDEVGNYLSR EDEYALSIYP KDVVDRLKKM VADIHKTLQE IQSHYVVDVK KIDFDLVPAI  60
SQTPSLKKTA THHASESSNQ SYHETRGHRW TEDEHKLFIE GLDKHGKGDW KSISMHMRTR  120
TPTQVASHAQ KYFNHWKSIN ENKKRRRRPS IHDVTHLENR NTSAHQRPVI GQTSNPTPGH  180
MDYGFGSVPE TVIPEALMNL GNTYISPSLD SNVSFTNIYD NNRRVRTIWT STPVCMGRRS  240
SKIAGRKEAQ NLKKAKLYSR IGKEVVSAVK KGGPNVTSNA ALVAVLEKVK ELDVPKDIVD  300
RNIKKATEKG QEAYIEKIYE VYGYGGVSMV VEVSTDKINR SVAKIREVVK DYGGKMADSG  360
SVLFKFRRAR VVNIKVTNAD KDQLLGIALD AGAEDVIDPP TYEDDTEEDI SERYYKIVGS  420
SENYSSILSK LREEGIDFES DNGSELLPNT TIEVDDEAVD LNKELMSKLL ELDDVDAVYT  480
DQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1kon_A3e-2524647916236Protein yebC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1479960.0BT147996.1 Lotus japonicus clone JCVI-FLLj-7M8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190792.11e-173probable transcriptional regulatory protein At2g25830
SwissprotO823141e-142U082_ARATH; Probable transcriptional regulatory protein At2g25830
TrEMBLA0A3Q7YBR61e-172A0A3Q7YBR6_CICAR; probable transcriptional regulatory protein At2g25830
STRINGXP_004501770.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-34MYB family protein