PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571606.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 244aa    MW: 27697.4 Da    PI: 7.2732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-1099143132
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............... CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.............k 32 
                     +r++h  +Er+RR+++N+ ++ Lr+l+P+++              
  XP_012571606.1  99 QRMTHITVERNRRKQMNHYLNVLRSLMPSSYvqryttgatqsntL 143
                     79***************************6435544444443330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-897144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-697132No hitNo description
SuperFamilySSF474591.25E-898135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.1598149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-799141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MALETVVFPQ DPFTYNNYLY SLVGEAGEEQ ENVLLGIINN NNVGQNQNEH ANWDSCSHSS  60
SPEVCTVDQT LSSTVEATVG RRKRRRTKNT KNKEEIENQR MTHITVERNR RKQMNHYLNV  120
LRSLMPSSYV QRYTTGATQS NTLTMEQHKQ WAVADIEVTM VDTHANIKIL SKKQTGQLMK  180
IVLGLQTLRL TILHLNVTTL ADMVLFSLSV KVEEGSQLNT VDEIAAAVNQ LLRTVQQELA  240
FHLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18185RKRRR
28186RKRRRT
38188RKRRRTKN
499110RMTHITVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571606.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571606.10.0transcription factor bHLH96-like isoform X2
SwissprotQ9C7T41e-60BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S3E9D41e-180A0A1S3E9D4_CICAR; transcription factor bHLH96-like isoform X2
STRINGXP_004501682.11e-149(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]