PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571838.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARR-B
Protein Properties Length: 569aa    MW: 64720.3 Da    PI: 6.2987
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.61.3e-23199252155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ +LH++Fv+av+ + G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_012571838.1 199 KARVVWSVDLHQKFVKAVNLI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252
                     68*****************99.********************************8 PP
2Response_reg844.6e-28191271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k +y ev+++  +++al+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  XP_012571838.1  19 VLVVDDDPTWLKILEKMLKKCNY-EVTTCCLARQALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 111
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el++
  XP_012571838.1 112 ACDYLLKPIRMKELRN 127
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.4E-3715145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.7E-4516155No hitNo description
SMARTSM004489.6E-3317129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.65718133IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.6E-2519128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.09E-3020133No hitNo description
Gene3DG3DSA:1.10.10.604.5E-27196257IPR009057Homeodomain-like
SuperFamilySSF466896.81E-17197256IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-21199252IPR006447Myb domain, plants
PfamPF002493.4E-7201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MDNGCFTSPR RDFPNGLRVL VVDDDPTWLK ILEKMLKKCN YEVTTCCLAR QALNLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVLRKRIHEV REFENFESFE SIHLMRNGSE MSEEANMFAL EDMTSTKKRK  180
DVDNKHDDKE FSDPSSSKKA RVVWSVDLHQ KFVKAVNLIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQKY RLYLSRLQKD NEQKSSSSGM KHSDLPSKDV GSYGFPNSAN KQQNDVPIDR  300
YNYLEGTIQH KNMETKSHEG IPKVTVPHST TAEKVRAITG NITDAGITHN RPFAPLDSEG  360
KCAVIDCTLS TQYSWTEIPK RQLKEEQESL VHLEDNCNML PLQGKKHHIQ VDQSQSITSI  420
SSTPSTKEQE VDAIIKTKHL LADYKKDYTS SVSSKRSVVD TFPFQPGSLM MNDQPSQPIS  480
TSNFGLKTQS SNLGCIPDLE SYQRSLLLVG EAASAPLDED LYFYWHNMNF GQSNIGMSEY  540
YDPGLLTEVP THLYDSTDYS VIDQGLFIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16195257163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1405050.0BT140505.1 Medicago truncatula clone JCVI-FLMt-22H12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502338.10.0two-component response regulator ORR26
TrEMBLA0A1S2YBE10.0A0A1S2YBE1_CICAR; Two-component response regulator
STRINGXP_004502338.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-122response regulator 11