PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571846.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YC
Protein Properties Length: 150aa    MW: 17198.8 Da    PI: 6.1463
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.21.5e-1715971798
           NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                     + e+P +r+kki+  dedvk++s+ea  l+s++ elf+  l+ +s   a e+kr+t+k   i  av+r   i dfl+d  p 
  XP_012571846.1 15 IEPEFPRSRVKKIMTLDEDVKRVSSEALFLVSRSTELFLHLLAEKSAQVAIEKKRKTVKLEHIRIAVKRHRpISDFLLDSLPM 97
                    3679***************************************************************9975489*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.53E-191784IPR009072Histone-fold
PfamPF008082.5E-191881IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.6E-201996IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVVVMAEEEE KTLSIEPEFP RSRVKKIMTL DEDVKRVSSE ALFLVSRSTE LFLHLLAEKS  60
AQVAIEKKRK TVKLEHIRIA VKRHRPISDF LLDSLPMPSE TVKSDKPVQD ADRPKSVPDG  120
TRRIDHIFRK SEAQAQVEAQ EPEPEPMEES
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571846.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190560.11e-101nuclear transcription factor Y subunit C-4
TrEMBLA0A3Q7YFI71e-100A0A3Q7YFI7_CICAR; nuclear transcription factor Y subunit C-4
STRINGXP_004502298.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-48nuclear factor Y, subunit C13