PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572031.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 804aa    MW: 93965.8 Da    PI: 9.0105
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.53e-2547137191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                     +fYneY+k++GF +r+++ +ksk++g  t+r+f+C keg r  +k+  +   ++raetrtgCka++++++++  gk++v +++ +HnH+l+p
  XP_012572031.1  47 EFYNEYSKRIGFGIRREYANKSKKDGILTSRRFTCFKEGIRGVDKRG-HPVGEHRAETRTGCKARMVISLDRkIGKYKVVDFVAQHNHPLQP 137
                     6******************************************9999.99999*****************9989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-2147137IPR004330FAR1 DNA binding domain
PROSITE profilePS508119.06483136IPR003657WRKY domain
PfamPF105511.6E-29257351IPR018289MULE transposase domain
PROSITE profilePS509669.371523570IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-4545572IPR006564Zinc finger, PMZ-type
PfamPF044347.1E-4546570IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MNPSSNPLVD CVDKWVNNIH DKIVPESNDN SQPHMEMKFE SEATTYEFYN EYSKRIGFGI  60
RREYANKSKK DGILTSRRFT CFKEGIRGVD KRGHPVGEHR AETRTGCKAR MVISLDRKIG  120
KYKVVDFVAQ HNHPLQPPEY VHMIRSHRHI SEVQASQIIL ADESGLRPKD FHEYMSKQVG  180
GIETVGFTRQ DLKNYLRTKR KQSLKYGDVG ALLMYFKQES ENPSFFYEFQ MDVDEQITNI  240
FWADAQMIND YGYFGDVITF DTTYKTNKDY RPLGGFVGLN NHRQTIIFGA ALLYDETIPS  300
FQWLFETFLK AMGGEKPKTI LTDQDAAMAK AISLVVPETF HGLCTWHIRQ NALKHVNHLY  360
QKSSQFCLEF EACIDLHEEE AEFLNAWNSL LVEHNVSKDS WLHMIFQLKE KWAWAYVRKT  420
FTAGMRSTQL SESFNADLKN HLKSDLNLVQ FFTHFKRVVN GKRNNESEAD FESRHKLPRL  480
KMKKARMLVQ AGNVYTPKIF EEFQEEYEEY QDTCIKDLKE GLYVVTNYDN TKERIVMGNP  540
MDQKVACDCR KFETHGILCN HALKVLDAIN IKLIPQHYIL KRWTRDARLG SNQDWKVKHV  600
ELDIKAHFMK RYNEFCPRMI KLTNRASESH ETYVFLSKVY KESNKIIDDM LAKIYVNEES  660
SRMIHVSISI ANDEIDNNLD TLGCAKGIKK RDRSRQNKKR PKSWVEKLSR KRNRSSQKQN  720
RKNLVQLLPQ PLDRNQFLSE VDTRIQHQAT TQMTQSSQVD NGIQHQATTQ MTQSSQVDNE  780
IQHQTTTQIT QLSQVDALRL HNFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191736.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7Y2610.0A0A3Q7Y261_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004503202.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-121FAR1-related sequence 5