PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572051.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WOX

Protein Properties

Length: 367aa MW: 41698.3 Da PI: 7.9895

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.6	3.8e-22	89	148	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ XP_012572051.1 89 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 148 7***************99************************************97 PP
2	Wus_type_Homeobox	114.6	4.7e-37	88	150	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+ XP_012572051.1 88 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 150 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	9.5E-5	86	153	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.9E-9	89	148	IPR009057	Homeodomain-like
Pfam	PF00046	7.3E-20	89	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.02E-12	89	154	IPR009057	Homeodomain-like
CDD	cd00086	1.31E-6	90	150	No hit	No description
PROSITE profile	PS50071	11.451	94	149	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048513	Biological Process	animal organ development
GO:0099402	Biological Process	plant organ development
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MWMVGYNEGS DFNVAADYPF NGRKLRPIIP RPVTSTTPPN NTSTTPCLNR NIHANDFFSQ 60 YHNLQAAAAS VGDQSKRTEL NNSAVVVSSR WNPTPEQLRA LEELYRRGTR TPSAEQIQQI 120 TAQLRRFGKI EGKNVFYWFQ NHKARERQKR RRQMESSAAD QFDATTSLVE KKDLGSSRTV 180 FEVEQTKNNW LPSTNSTTST LAEESVSIQR AVAAGKADQC RTDGWVQFDE LELQQRRNFM 240 ERNATWHMMQ FTCPHPTTLL IPNNSSNYTS SITTTTPTAT LTTTLMDPKH DLSLFISPHT 300 HSQRQNGFHN NITHNDDHCV ESQTLQLFPI RNGDGCSDII NHHKETEISA SAMNAPSHFI 360 EFLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MWMVGYNEGS DFNVAADYPF NGRKLRPIIP RPVTSTTPPN NTSTTPCLNR NIHANDFFSQ  60
YHNLQAAAAS VGDQSKRTEL NNSAVVVSSR WNPTPEQLRA LEELYRRGTR TPSAEQIQQI  120
TAQLRRFGKI EGKNVFYWFQ NHKARERQKR RRQMESSAAD QFDATTSLVE KKDLGSSRTV  180
FEVEQTKNNW LPSTNSTTST LAEESVSIQR AVAAGKADQC RTDGWVQFDE LELQQRRNFM  240
ERNATWHMMQ FTCPHPTTLL IPNNSSNYTS SITTTTPTAT LTTTLMDPKH DLSLFISPHT  300
HSQRQNGFHN NITHNDDHCV ESQTLQLFPI RNGDGCSDII NHHKETEISA SAMNAPSHFI  360
EFLPLKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572051.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004503282.1	0.0	WUSCHEL-related homeobox 1 isoform X3
TrEMBL	A0A1S2YDM5	0.0	A0A1S2YDM5_CICAR; WUSCHEL-related homeobox 1 isoform X3
STRING	XP_004503280.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	4e-59	WUSCHEL related homeobox 1