PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572230.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 159aa MW: 18484.6 Da PI: 9.6

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.2	8.1e-29	102	159	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +dDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk+ver+++d ++v++tYeg Hnh XP_012572230.1 102 MDDGYKWRKYGKKSVKNNPNLRNYYKCSSLGCNVKKRVERDRDDSSYVITTYEGVHNH 159 69*******************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-31	90	159	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-26	94	159	IPR003657	WRKY domain
PROSITE profile	PS50811	29.287	97	159	IPR003657	WRKY domain
SMART	SM00774	8.5E-30	102	159	IPR003657	WRKY domain
Pfam	PF03106	7.3E-23	103	159	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDYNFVNPHP NPNFVHSTHM VPSSPHFILS DYLRLDDIFI DQESHSQSIE SLYKVTFSHA 60 NQGSNHATSK NNNIKYKNGI KRNKGEVGPN IAFRTRSELE IMDDGYKWRK YGKKSVKNNP 120 NLRNYYKCSS LGCNVKKRVE RDRDDSSYVI TTYEGVHNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-24	92	159	7	74	Probable WRKY transcription factor 4
2lex_A	4e-24	92	159	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572230.1	1e-116	probable WRKY transcription factor 51
Swissprot	Q93WU9	2e-40	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A1S3E8T7	1e-115	A0A1S3E8T7_CICAR; probable WRKY transcription factor 51
STRING	AET04594	8e-88	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-40	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]