PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572428.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 240aa MW: 26753.4 Da PI: 9.7091

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.5e-14	45	91	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h + E++RR+++N ++ Lr+l+P++ +K + a++L A+eYI++L XP_012572428.1 45 TEHFATEKQRREQLNGKYKILRSLIPNP-----TKIDRASVLGDAIEYIREL 91 68************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.51E-15	40	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.307	42	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-11	45	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-13	45	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.47E-10	47	91	No hit	No description
SMART	SM00353	9.6E-12	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSSRNGSLFG GGDEMEGDGS QLDMGVLEFN RVTASVGKGR GGKATEHFAT EKQRREQLNG 60 KYKILRSLIP NPTKIDRASV LGDAIEYIRE LVRTKNELTL LVERKRHGRE MSKRLKTEDD 120 AAESCNIKPF GDADGSIRTS WLQRKSKDSA VXVRIIDNDV TIKLIQRKKV NCLLFVSKVL 180 DELQLELYHV AGGFVGEYFS FLLKSKVIEG SSVYPSAIAN RVIDVLDTQY AAVVPILSRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572428.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009066	7e-65	AP009066.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT07D18, TM0256, complete sequence.
GenBank	BT136391	7e-65	BT136391.1 Lotus japonicus clone JCVI-FLLj-19K6 unknown mRNA.
GenBank	FJ379760	7e-65	FJ379760.1 Lotus japonicus putative basic helix-loop-helix protein BHLH14 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027191036.1	1e-173	LOW QUALITY PROTEIN: transcription factor EAT1-like
Swissprot	Q8GX46	3e-66	BH091_ARATH; Transcription factor bHLH91
TrEMBL	A0A3Q7Y126	1e-172	A0A3Q7Y126_CICAR; LOW QUALITY PROTEIN: transcription factor EAT1-like
STRING	XP_004504639.1	1e-151	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3743	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]