PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572618.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 350aa    MW: 39487.4 Da    PI: 7.5584
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.13.1e-201053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + en+  rq t++kR+ngi+KKA ELS+LCd+++ +++fs+ gk
  XP_012572618.1 10 KLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPGGK 53
                    6799************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.282153IPR002100Transcription factor, MADS-box
CDDcd001205.89E-24254No hitNo description
SuperFamilySSF554556.93E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-16323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKNGIMK KATELSILCD IDIILLMFSP GGKPSLCRGR  60
RGNFEEVIAK FAQLTPQERA KRKLESLEGL RKTFKKLDHN VNIQEFMGAS SQTIEDLSNH  120
AKLLQIQISE IHERVSQWTE CDKISSVEQL GQMENSLRQS LNQIQTRKET MKNQQIVSLQ  180
CNNQFNEMNI PFRMNTDQHL QPLSWIANGD NQNIVLPEDS NLFLHKEVEG SASSSFGSYA  240
SYLGSSGKTE ISNSGPESCV LSDMSSNAPL RQQLNGQFPY MPYNFNLLNN LKFQPAAEIN  300
PHENPADYHV NGSFEAPRQG YESNNHGWAS TSGPCAVTMF DEHLYAQQPN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505413.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-104AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A1S2YIS50.0A0A1S2YIS5_CICAR; agamous-like MADS-box protein AGL30
STRINGXP_004505413.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-83AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]