PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572733.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 142aa MW: 16522 Da PI: 9.946

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+ k + ++H +++ XP_012572733.1 81 FTCRKCGKPLAVKGDWRTHEKNC 103 89*****************9987 PP
2	zf-C2H2	10.6	0.0017	110	126	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 +Cg F++k +Lk Hi+ XP_012572733.1 110 ICGSDFKHKRSLKDHIK 126 8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.82E-5	66	101	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MEEEDEEGIL MERMHLWGHS SQYRRGLDSL KRTHPRPLLD IPCYCCSKGC KNNIEHPRPK 60 PLKDFRTLQT HYKRKHGSKP FTCRKCGKPL AVKGDWRTHE KNCGKRWLCI CGSDFKHKRS 120 LKDHIKAFGF GHSPFSSSSD GI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	DSLKRT

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572733.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572733.1	1e-102	protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-69	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A1S3EBD7	1e-100	A0A1S3EBD7_CICAR; protein TRANSPARENT TESTA 1-like
STRING	XP_004505848.1	3e-94	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	7e-67	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]