PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572822.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

YABBY

Protein Properties

Length: 177aa MW: 20095 Da PI: 8.3946

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	195.8	1.9e-60	6	155	5	168
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkvee...enlksnvekeesastsv 96 ++e+vCyv+CnfCntil+v+vP++sl ++vtvrCGhC++llsvn+ + l++ + l ++ ee +++ s + ++ ast + XP_012572822.1 6 MATERVCYVHCNFCNTILVVNVPYSSLQTMVTVRCGHCANLLSVNMVAS--LQPFSPP--------LPQQIVLEEpsnKEMGSSSKCNKIASTFE 90 579**************************************776554..4444444........33333333300033333333333344444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++ ++e pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ih+ XP_012572822.1 91 PV------VEHEQPRIPP-IRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHH 155 43......4577789888.9************************************************84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-66	7	155	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-7	102	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	111	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSMDMMATER VCYVHCNFCN TILVVNVPYS SLQTMVTVRC GHCANLLSVN MVASLQPFSP 60 PLPQQIVLEE PSNKEMGSSS KCNKIASTFE PVVEHEQPRI PPIRPIEKRH RVPSAYNRFI 120 KEEIQRIKAS NPDISHREAF SSAAKNWAHF PHIHHFGKQQ AKLDHGEATH EKSNGFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572822.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572822.1	1e-131	putative axial regulator YABBY 2
Swissprot	Q9XFB0	7e-65	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1S3EAG3	1e-130	A0A1S3EAG3_CICAR; putative axial regulator YABBY 2
STRING	GLYMA12G10210.3	8e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	9e-55	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]