PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572824.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

YABBY

Protein Properties

Length: 143aa MW: 16211.4 Da PI: 9.303

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572824.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	142	6.6e-44	1	121	34	168
YABBY 34 vvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkvee...enlksnvekeesastsvsseklsenedeevprvppvirPPekrqrv 125 +vtvrCGhC++llsvn+ + l++ + l ++ ee +++ s + ++ ast +++ ++e pr+pp irP ekr rv XP_012572824.1 1 MVTVRCGHCANLLSVNMVAS--LQPFSPP--------LPQQIVLEEpsnKEMGSSSKCNKIASTFEPV------VEHEQPRIPP-IRPIEKRHRV 78 69**********776554..4444444........3333333330003333333333334444443......4577789888.9***** PP YABBY 126 PsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 PsaynrfikeeiqrikasnPdishreafs aaknWahfP+ih+ XP_012572824.1 79 PSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHH 121 ***************************************84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.0E-48	1	121	IPR006780	YABBY protein
SuperFamily	SSF47095	1.1E-7	68	117	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.2E-5	77	117	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MVTVRCGHCA NLLSVNMVAS LQPFSPPLPQ QIVLEEPSNK EMGSSSKCNK IASTFEPVVE 60 HEQPRIPPIR PIEKRHRVPS AYNRFIKEEI QRIKASNPDI SHREAFSSAA KNWAHFPHIH 120 HFGKQQAKLD HGEATHEKSN GFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572824.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090571	7e-70	BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572822.1	1e-103	putative axial regulator YABBY 2
Swissprot	Q9XFB0	8e-47	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1S3EAG3	1e-102	A0A1S3EAG3_CICAR; putative axial regulator YABBY 2
STRING	GLYMA12G10210.3	3e-68	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-37	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]