PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012573015.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 268aa MW: 30769.8 Da PI: 6.1689

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012573015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47	8.6e-15	41	126	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ F ++++s+k ++ge + Cs+eg++ ++ + + +t +++ +C ak+++k++kdg w++tk+el+H+He + XP_012573015.1 41 SFYEEYASRKDFGWKIRSSRKW-QDGEPCYLILSCSREGSKVSKISC---TLKTLPTKVNNCLAKIVMKLDKDGLWYITKFELDHTHETS 126 5**************99998.8888999*******998877...8899999999*************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-12	41	126	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-11	223	267	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDCGAIEDEG IRVDNLDDDD NACCWEPATR MGFSCLEEVK SFYEEYASRK DFGWKIRSSR 60 KWQDGEPCYL ILSCSREGSK VSKISCTLKT LPTKVNNCLA KIVMKLDKDG LWYITKFELD 120 HTHETSPTKA RLFKANKKMN LHVKRTIQIN DDAGVRINNT FQSLVKDAGG HENVPFCERE 180 VRNYVNKERR AIGKEDLDDD FHVRNVFWAD ARSRAAYEYF GDVVTFDITY LTNKYDMPFA 240 AFVCVNHHGQ STLLVCGLLS GEDTYSFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012573015.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012573015.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S3EB13	0.0	A0A1S3EB13_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004494023.1	1e-174	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-32	FAR1 family protein