PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012573278.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 183aa MW: 21350.7 Da PI: 9.9947

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012573278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84	2.5e-26	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka++++k +k+gkw++tk++++HnH+l+ XP_012573278.1 12 FYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRSSTRDGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 100 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-24	12	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEFVSEDAAK IFYDEYARHV GFVMRVMSCR RSERDGRILA RRLGCNKEGH CVSIRGKFGP 60 VRKPRSSTRD GCKAMIHIKY DKSGKWVITK FVKDHNHPLV VSPREARQTV DEKDKKIQEL 120 TTELRIKKRL CATYQEQLTS FMKTVEDHSD KLSARIRHIL GNLKEFESIE ELLLQRACAR 180 CDH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012573278.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT144425	0.0	BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004507548.1	1e-133	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_004507549.1	1e-133	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_004507550.1	1e-133	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_012573278.1	1e-134	protein FAR1-RELATED SEQUENCE 5-like isoform X4
Swissprot	Q9SZL8	1e-20	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S2YNM1	1e-132	A0A1S2YNM1_CICAR; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1S3ECY9	1e-133	A0A1S3ECY9_CICAR; protein FAR1-RELATED SEQUENCE 5-like isoform X4
STRING	XP_004507548.1	1e-133	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-100	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]