PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573357.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARR-B
Protein Properties Length: 595aa    MW: 66106.5 Da    PI: 7.2144
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28209262155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++F+ av+qL G +kA+Pk+i+e+m+v+gLt+e+v+SHLQkYRl
  XP_012573357.1 209 KPRVVWSVELHQQFMAAVNQL-GLDKAVPKKIMEMMNVPGLTRENVASHLQKYRL 262
                     79*******************.********************************8 PP
2Response_reg73.49.1e-25321401109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ + +l+++l    y ev+ ++ +e al ll+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a + ++ + + ++ G
  XP_012573357.1  32 VLVVDDDPTCLTILERMLHFCLY-EVTKCKRAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKNVVMKGVRHG 124
                     89*****************9999.***************999999**********************6654.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l +
  XP_012573357.1 125 ACDYLIKPVRIEALKN 140
                     ************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.3E-4029153No hitNo description
SuperFamilySSF521721.01E-3429153IPR011006CheY-like superfamily
SMARTSM004481.5E-2830142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.03431146IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.2E-2232140IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.12E-2533145No hitNo description
PROSITE profilePS512949.187206265IPR017930Myb domain
SuperFamilySSF466895.91E-20206266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-30208267IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-24209262IPR006447Myb domain, plants
PfamPF002493.0E-8211261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MKLNNKLSMP TPTSTSNFGD LIADQFPAGL RVLVVDDDPT CLTILERMLH FCLYEVTKCK  60
RAEVALSLLR ENKNGFDIVL SDVHMPDMDG FKLLEHIGLE MDLPVIMMSA DDGKNVVMKG  120
VRHGACDYLI KPVRIEALKN IWQHVVRKRK NGRKDVEQSG GLDDGDRRQK ACDDVDYSSS  180
ANEGKSSRKR RDEEDDEADE RDDSSTLKKP RVVWSVELHQ QFMAAVNQLG LDKAVPKKIM  240
EMMNVPGLTR ENVASHLQKY RLYLRRLSGV PQQQSNMNNY FIMSPQESST FGATSINAID  300
LQNLPPQSLA KLQWSTAKAG APFSLVEQNN LFGFENSKLR FGEGQLQHSS SSKSTNFLHG  360
IPTNMEPKQF ANLHQSAQSF GSMSMRVNAS TSQRSPWSTQ TARFLPRGQM LNENTNSHAT  420
RFPSSLVQLA GPKGNVIVAD TSNITPSYNS VSQRSSLSSF PMNQTTEISV NSFPLRRTPG  480
ISSINSKGHR GVSSIQPTGQ VRDSTLIGKT LISTGDGMSQ GNIQNFGQHI NTFLVDNIVR  540
VKSERIPDPS SEINPFSEQF GHVDLMSALL NQYEGVGPVE NEFDFDGYSI DNIPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21208268464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146169RKRKNGRKDVEQSGGLDDGDRRQK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1350810.0BT135081.1 Medicago truncatula clone JCVI-FLMt-22G12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487801.10.0two-component response regulator ARR1-like
SwissprotQ9ZWJ91e-157ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A1S2XDU50.0A0A1S2XDU5_CICAR; two-component response regulator ARR1-like
STRINGXP_004487800.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-147response regulator 1
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]