PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012573713.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

TALE

Protein Properties

Length: 772aa MW: 84881 Da PI: 7.2351

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012573713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.3	7.3e-10	548	585	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++++ LA+++gL+ +qV++WF N R + XP_012573713.1 548 FEHflHPYPSDADKQLLARQTGLSRNQVSNWFINARVR 585 664459******************************88 PP
2	BELL	104	1e-33	408	479	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++l+eVd+rY++y+eq+q+v++sF+ Yt+lA+ka+SrhFrcLkdai+ q+ XP_012573713.1 408 DRIEHQRRKVKLLTMLDEVDRRYNHYCEQMQMVVNSFDLXXXXXXXXXYTALAQKAMSRHFRCLKDAITAQL 479 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.7E-67	338	477	IPR006563	POX domain
Pfam	PF07526	7.2E-47	343	476	IPR006563	POX domain
PROSITE profile	PS50071	12.762	526	589	IPR001356	Homeobox domain
SMART	SM00389	1.5E-10	529	593	IPR001356	Homeobox domain
CDD	cd00086	1.72E-13	529	590	No hit	No description
SuperFamily	SSF46689	3.81E-17	531	596	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	532	595	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-18	546	585	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence Send to blast
MGIATQTPSL NNNSSNLSNS KNHQFHSFYS NSQNSNNSMS QDYHNHHHNH IAFSNGFERS 60 TTIENQNQRD KVRVHGGFGS QQQPPPPPLI GIDEEPGGLP VYETTGMLSE MFNFPHSASS 120 AAELLEQQQQ QQQQQQMTST TSFRSSTRTP PQHGIASSSD WYGNRQTILT DSKNHPHHHQ 180 MSNINADSAA AMQLFLMNPQ TTRSPSPPQP PSTNSSSTLH MLLPNPSTSN LQGFTSGTGG 240 SFGQFTWVPG TTHHHHQINN NPVEISSVVE GQGLSLSLSS SLQQQQHHSE ELRMGDAAGF 300 LYYNQGGGAS YKNLGGLGTI NQHGHVGFGS SSSSSSSLGV VNVLRNSKYV KAAQELLEEF 360 CSVGRGQFKK NNNFARQLSN PNSNHGGSVG GGASSSSSKD VSPLSPADRI EHQRRKVKLL 420 TMLDEVDRRY NHYCEQMQMV VNSFDLXXXX XXXXXYTALA QKAMSRHFRC LKDAITAQLK 480 HSCELLGEKD GVGTSGLTKG ETPRLKILEQ SLRQQRAFHQ MGMMEQEAWR PQRGLPERSV 540 NILRAWLFEH FLHPYPSDAD KQLLARQTGL SRNQVSNWFI NARVRLWKPM VEDMYQEELK 600 EAEGSDTEED NNNNNKEKNQ NSSNNTSGHN NIATTIAQTP TPSSTTTSKR SNINANENDV 660 SLTTAINRQG FSENQAITSA TKTTVSEVAP PISDTDLSPQ NNNRSMVVDD TCRHGSFVTA 720 EYGTASAATS DIGSTLIRFG TTSGDVSLTL GLRHAGNMPD KTPFSLRDFG GI

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence Send to blast

MGIATQTPSL NNNSSNLSNS KNHQFHSFYS NSQNSNNSMS QDYHNHHHNH IAFSNGFERS  60
TTIENQNQRD KVRVHGGFGS QQQPPPPPLI GIDEEPGGLP VYETTGMLSE MFNFPHSASS  120
AAELLEQQQQ QQQQQQMTST TSFRSSTRTP PQHGIASSSD WYGNRQTILT DSKNHPHHHQ  180
MSNINADSAA AMQLFLMNPQ TTRSPSPPQP PSTNSSSTLH MLLPNPSTSN LQGFTSGTGG  240
SFGQFTWVPG TTHHHHQINN NPVEISSVVE GQGLSLSLSS SLQQQQHHSE ELRMGDAAGF  300
LYYNQGGGAS YKNLGGLGTI NQHGHVGFGS SSSSSSSLGV VNVLRNSKYV KAAQELLEEF  360
CSVGRGQFKK NNNFARQLSN PNSNHGGSVG GGASSSSSKD VSPLSPADRI EHQRRKVKLL  420
TMLDEVDRRY NHYCEQMQMV VNSFDLXXXX XXXXXYTALA QKAMSRHFRC LKDAITAQLK  480
HSCELLGEKD GVGTSGLTKG ETPRLKILEQ SLRQQRAFHQ MGMMEQEAWR PQRGLPERSV  540
NILRAWLFEH FLHPYPSDAD KQLLARQTGL SRNQVSNWFI NARVRLWKPM VEDMYQEELK  600
EAEGSDTEED NNNNNKEKNQ NSSNNTSGHN NIATTIAQTP TPSSTTTSKR SNINANENDV  660
SLTTAINRQG FSENQAITSA TKTTVSEVAP PISDTDLSPQ NNNRSMVVDD TCRHGSFVTA  720
EYGTASAATS DIGSTLIRFG TTSGDVSLTL GLRHAGNMPD KTPFSLRDFG GI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	535	592	5	62	Homeobox protein Meis2
3k2a_B	2e-16	535	592	5	62	Homeobox protein Meis2
4xrs_A	2e-16	535	592	1	58	Homeobox protein Meis1
4xrs_B	2e-16	535	592	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012573713.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012573713.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-165	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1S3EE78	0.0	A0A1S3EE78_CICAR; BEL1-like homeodomain protein 4
STRING	XP_004509227.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-141	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]