PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012573945.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 413aa MW: 46456.3 Da PI: 6.5186

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012573945.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.9	5.8e-06	321	359	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_012573945.1 321 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 359 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.576	310	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.34E-7	320	363	No hit	No description
SuperFamily	SSF47459	1.01E-11	320	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0049	321	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-9	324	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MAEEQFQGSG NWWETPARNM RFESWQQQQQ QHHDTMSASG SSSVVFHDTL KLQPSDSSNS 60 NNDSNLHMMD LGLSSQTIDW NQASLLRGEK SSEGSFRSML QENLNSSNTN FQQENEGVRV 120 GLSHQVNWKQ EKLFSTESSN NEFKQVNRGF SLDQTQFSPQ YSSEESNMIS QGLSACSSTT 180 FQIDSSTIYG NSSMLQGLLG NETNQIQQQQ AMNFPYSTSY GLTTNELMPS WSKVTHQKQQ 240 PQNNQLHFTN NAPFWNASEG TIKDAPSSFL PPFATPIFGT PQPKNISEGR DSSSVAKKSG 300 SEPAPKRPKN ETPSPLPAFK VRKEKMGDRI TALQQLVSPF GKTDTASVLS EAIEYIKFLH 360 EQVTVLSTPY MKSGAPIQHQ QVVILVNLRK QRVQNRILEA EGYAWYQFLV HFQ

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MAEEQFQGSG NWWETPARNM RFESWQQQQQ QHHDTMSASG SSSVVFHDTL KLQPSDSSNS  60
NNDSNLHMMD LGLSSQTIDW NQASLLRGEK SSEGSFRSML QENLNSSNTN FQQENEGVRV  120
GLSHQVNWKQ EKLFSTESSN NEFKQVNRGF SLDQTQFSPQ YSSEESNMIS QGLSACSSTT  180
FQIDSSTIYG NSSMLQGLLG NETNQIQQQQ AMNFPYSTSY GLTTNELMPS WSKVTHQKQQ  240
PQNNQLHFTN NAPFWNASEG TIKDAPSSFL PPFATPIFGT PQPKNISEGR DSSSVAKKSG  300
SEPAPKRPKN ETPSPLPAFK VRKEKMGDRI TALQQLVSPF GKTDTASVLS EAIEYIKFLH  360
EQVTVLSTPY MKSGAPIQHQ QVVILVNLRK QRVQNRILEA EGYAWYQFLV HFQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012573945.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012573945.1	0.0	transcription factor bHLH123-like isoform X3
TrEMBL	A0A1S3EDN1	0.0	A0A1S3EDN1_CICAR; transcription factor bHLH123-like isoform X3
STRING	XP_004509985.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-58	bHLH family protein