PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573985.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 255aa    MW: 28894.8 Da    PI: 4.8521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-1461104755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A+eYI++L+
  XP_012573985.1  61 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIEYIQHLH 104
                     67*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.54554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.14E-1856120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-1357108No hitNo description
SMARTSM003538.2E-1660109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1760119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-1261103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MENIGEEYKH YWETNMFLQT QELDRDGCGG SWGLDEAFSG YYDSSSPDGA ASSAVSSKNI  60
VSERNRRKKL NERLFALRSV VPNISKMDKA SIIKDAIEYI QHLHEQEKII QAEIMELESG  120
MPNNNNNNNI NPSNDFDQEL PILLRSKKKR TDQLYDCVTS TSFPIEVLEL RVTYMGENTI  180
VVSLTCSKRT DTMVKLCEVF ESLKLKIITA NITSFSGRLL KTVFIEANEE EKDLLQIKIR  240
TAIAALNDPL SPVSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1396081e-138BT139608.1 Medicago truncatula clone JCVI-FLMt-13I5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012573985.10.0transcription factor bHLH35 isoform X1
SwissprotQ2HIV95e-94BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3EDS00.0A0A1S3EDS0_CICAR; transcription factor bHLH35 isoform X1
STRINGXP_004487998.11e-168(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-85bHLH family protein