PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012574060.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 449aa MW: 50251.8 Da PI: 6.914

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012574060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.7e-07	362	402	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++++P K++ a++L +A +Y+k L XP_012574060.1 362 ARHRRERISEKIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 402 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.17	353	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-11	358	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-12	359	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.39E-9	359	407	No hit	No description
SuperFamily	SSF47459	3.53E-13	359	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	363	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MIGNIYKDQS FISSQKLQSS MEGLNWNGSE ILESTPILWS THHQEQNMEG DYSSISKSHI 60 HQIQEMDQKV QTSHTVMMPN TNFSQHAAAA ALTTMTVKSG EAAVSSWKKE PLILQSFQSS 120 SVNKPYNSST ITTTSTNYMP DFNMAHQQQK QLIKSGCSFD CLISASTNSN TDTTSIEDDD 180 GISNIFSDCR RRNLWNFSYA TTASNSSAET DHSNVSNGTN YKNKDMQCNK LNELDETMSQ 240 TSSDQLQSKA SDHHFFSTVQ NSVSVENGFG IFSDKPPKCK KPRWEKGPFS SNINFQQPKS 300 STTCCSSSSN EETDPEAVAA MKEMMYRAAA FRPVNFGMEN DVIEKPKRKN VKISNDPQTV 360 AARHRRERIS EKIRVLQKIV PGGSKMDTAS MLDEAANYLK FLRSQVKALE SLGNKVNAMD 420 CPSTSIAFSF NPSFHMQIHP SDHNNHDYY

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MIGNIYKDQS FISSQKLQSS MEGLNWNGSE ILESTPILWS THHQEQNMEG DYSSISKSHI  60
HQIQEMDQKV QTSHTVMMPN TNFSQHAAAA ALTTMTVKSG EAAVSSWKKE PLILQSFQSS  120
SVNKPYNSST ITTTSTNYMP DFNMAHQQQK QLIKSGCSFD CLISASTNSN TDTTSIEDDD  180
GISNIFSDCR RRNLWNFSYA TTASNSSAET DHSNVSNGTN YKNKDMQCNK LNELDETMSQ  240
TSSDQLQSKA SDHHFFSTVQ NSVSVENGFG IFSDKPPKCK KPRWEKGPFS SNINFQQPKS  300
STTCCSSSSN EETDPEAVAA MKEMMYRAAA FRPVNFGMEN DVIEKPKRKN VKISNDPQTV  360
AARHRRERIS EKIRVLQKIV PGGSKMDTAS MLDEAANYLK FLRSQVKALE SLGNKVNAMD  420
CPSTSIAFSF NPSFHMQIHP SDHNNHDYY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012574060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510332.2	0.0	transcription factor bHLH87-like isoform X1
Swissprot	Q8S3D2	2e-71	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1S2YUZ8	0.0	A0A1S2YUZ8_CICAR; transcription factor bHLH87-like isoform X1
STRING	XP_004510332.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	5e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]