PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012574061.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 429aa MW: 47995.2 Da PI: 6.7886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012574061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.6e-07	342	382	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++++P K++ a++L +A +Y+k L XP_012574061.1 342 ARHRRERISEKIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 382 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.17	333	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-11	338	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.76E-9	339	387	No hit	No description
SMART	SM00353	3.9E-12	339	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-13	339	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-4	343	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MEGLNWNGSE ILESTPILWS THHQEQNMEG DYSSISKSHI HQIQEMDQKV QTSHTVMMPN 60 TNFSQHAAAA ALTTMTVKSG EAAVSSWKKE PLILQSFQSS SVNKPYNSST ITTTSTNYMP 120 DFNMAHQQQK QLIKSGCSFD CLISASTNSN TDTTSIEDDD GISNIFSDCR RRNLWNFSYA 180 TTASNSSAET DHSNVSNGTN YKNKDMQCNK LNELDETMSQ TSSDQLQSKA SDHHFFSTVQ 240 NSVSVENGFG IFSDKPPKCK KPRWEKGPFS SNINFQQPKS STTCCSSSSN EETDPEAVAA 300 MKEMMYRAAA FRPVNFGMEN DVIEKPKRKN VKISNDPQTV AARHRRERIS EKIRVLQKIV 360 PGGSKMDTAS MLDEAANYLK FLRSQVKALE SLGNKVNAMD CPSTSIAFSF NPSFHMQIHP 420 SDHNNHDYY

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MEGLNWNGSE ILESTPILWS THHQEQNMEG DYSSISKSHI HQIQEMDQKV QTSHTVMMPN  60
TNFSQHAAAA ALTTMTVKSG EAAVSSWKKE PLILQSFQSS SVNKPYNSST ITTTSTNYMP  120
DFNMAHQQQK QLIKSGCSFD CLISASTNSN TDTTSIEDDD GISNIFSDCR RRNLWNFSYA  180
TTASNSSAET DHSNVSNGTN YKNKDMQCNK LNELDETMSQ TSSDQLQSKA SDHHFFSTVQ  240
NSVSVENGFG IFSDKPPKCK KPRWEKGPFS SNINFQQPKS STTCCSSSSN EETDPEAVAA  300
MKEMMYRAAA FRPVNFGMEN DVIEKPKRKN VKISNDPQTV AARHRRERIS EKIRVLQKIV  360
PGGSKMDTAS MLDEAANYLK FLRSQVKALE SLGNKVNAMD CPSTSIAFSF NPSFHMQIHP  420
SDHNNHDYY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012574061.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510332.2	0.0	transcription factor bHLH87-like isoform X1
Swissprot	Q8S3D2	1e-71	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1S2YUZ8	0.0	A0A1S2YUZ8_CICAR; transcription factor bHLH87-like isoform X1
STRING	XP_004510332.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	4e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]