PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574097.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 258aa    MW: 29594.1 Da    PI: 6.7249
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.4e-39221221101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn+ k++k l++  +++am+++++++++ra+dPv G+++ i++lq q+e  kael+
  XP_012574097.1  22 ACAACKYQRRKCAPDCILAPYFPHDKQRQFLNAHKLFGVSNINKIIKYLDPPLKDQAMRTIIFQSDMRANDPVGGCYKYIQDLQAQIEYCKAELD 116
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     l++++l
  XP_012574097.1 117 LVHQQL 122
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.54721122IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-3722119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNNNNITCIT RNNSNNNNTT QACAACKYQR RKCAPDCILA PYFPHDKQRQ FLNAHKLFGV  60
SNINKIIKYL DPPLKDQAMR TIIFQSDMRA NDPVGGCYKY IQDLQAQIEY CKAELDLVHQ  120
QLALFRAQAQ QQQQVYGGDQ VIMNGDSLLG FYNQGSIVSA NNPHYQYNIQ QMVPQQEQEQ  180
YLMMHESNSS IHNSPLQQHI NSWAMQSSIS LSSLSLHGQS SNASDEYDHK QILDIPCDER  240
NELGFDSREI LHHSLWPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-262312212111LOB family transfactor Ramosa2.1
5ly0_B1e-262312212111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409151e-108AC140915.6 Medicago truncatula chromosome 8 clone mth2-10l24 map 9.500cM, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510487.20.0LOB domain-containing protein 22
TrEMBLA0A1S2YV920.0A0A1S2YV92_CICAR; LOB domain-containing protein 22
STRINGXP_004510487.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.18e-51LOB domain-containing protein 22