PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012574127.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 323aa MW: 36586.6 Da PI: 4.5649

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012574127.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.8	5.4e-46	12	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +p+GfrF+Ptdeelv++yLk+k+ g++ l++vi+evd++k+ePwdLp+ ++k+++ ew+f + rd kya++kr nr tk g+Wkatg+d++++ XP_012574127.1 12 VPVGFRFRPTDEELVNHYLKNKLLGNDSILHNVIAEVDVCKFEPWDLPAcsAIKSDDPEWFFLCARDYKYAKSKRLNRRTKCGFWKATGNDRNIK 106 599**********************999899***********5347888888********************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++++g+kktLvfykg p +kt+Wv+hey++ XP_012574127.1 107 VRgTNKVIGTKKTLVFYKGCVPG-VKTNWVIHEYHA 141 9967778******988775.9*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-50	11	159	IPR003441	NAC domain
PROSITE profile	PS51005	50.618	12	159	IPR003441	NAC domain
Pfam	PF02365	4.4E-26	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
METTSFPILD FVPVGFRFRP TDEELVNHYL KNKLLGNDSI LHNVIAEVDV CKFEPWDLPA 60 CSAIKSDDPE WFFLCARDYK YAKSKRLNRR TKCGFWKATG NDRNIKVRGT NKVIGTKKTL 120 VFYKGCVPGV KTNWVIHEYH AVTFEDSQRN FVLCRLMKKA EKNGEDETDT MICDEGEPSR 180 PLSSDYENQE TVEGISDVDG TLQEMNMESL FQAPHQADRY FPFSTQQSSI FENEQEFGDI 240 PDTSTAYLEY RGSIEYNASN VFQSMHGVLH GSTCLVSSNN SNSQSTFQDD FLGVEASSCD 300 STADKPSEFN CNENEISSSP STL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-36	12	159	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-36	12	159	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-36	12	159	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-36	12	159	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	6e-36	12	159	17	165	NAC domain-containing protein 19
4dul_B	6e-36	12	159	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012574127.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012574126.2	1e-178	LOW QUALITY PROTEIN: NAC domain-containing protein 69-like
TrEMBL	A0A1S3EGP7	1e-176	A0A1S3EGP7_CICAR; LOW QUALITY PROTEIN: NAC domain-containing protein 69-like
STRING	AES84472	1e-135	(Medicago truncatula)
STRING	AES84621	1e-135	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	2e-55	NAC transcription factor-like 9