PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574145.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 673aa    MW: 75539.5 Da    PI: 6.894
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23115215198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       +   + +++l  +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF   + +
  XP_012574145.1 115 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELAAKDLHGYEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL--RGE 205
                     99****************************9543..445569************************************************..448 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                      ++l+v+v+r
  XP_012574145.1 206 HGQLRVGVRR 215
                     9999****98 PP
2Auxin_resp87.33.1e-29241330183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.........sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+ t+++F v+Y+Pr+  s+F+v ++k+++a++ +k+svGmRfkm+fe+eds+err+         sGt+vgv d++   W+nS+WrsLk
  XP_012574145.1 241 ASHAVMTRTMFVVYYKPRT--SQFIVGLNKYLEAVNhNKFSVGMRFKMRFEGEDSPERRYlllcdlvrfSGTIVGVGDVSA-GWSNSQWRSLK 330
                     689***************6..9*************9889*******************976666666668********777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-41104230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-41106244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-19113215No hitNo description
PfamPF023622.7E-21115215IPR003340B3 DNA binding domain
SMARTSM010195.4E-21115217IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801115217IPR003340B3 DNA binding domain
PfamPF065074.0E-27241330IPR010525Auxin response factor
SuperFamilySSF542776.38E-13546630No hitNo description
PfamPF023094.4E-5551590IPR033389AUX/IAA domain
PROSITE profilePS5174525.356554635IPR000270PB1 domain
PfamPF023091.0E-5596637IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MIKGVKNDDM YEELWKLSAG PLVDVPNTGD KVFYFPQGHM EQLQASTDQE LNQEIPHFNL  60
PSKILCRVVN IQLLAEQETD EVYACVALLP ESDQTVPANP DPDRSEAPKQ KFHSFCKILT  120
ASDTSTHGGF SVLRKHATEC LPPLDMTQAT PTQELAAKDL HGYEWKFKHI YRGQPRRHLL  180
TTGWSTFVAS KRLVAGDAFV FLRGEHGQLR VGVRRMAKQQ SSMPSSVISS QSMHLGVLAT  240
ASHAVMTRTM FVVYYKPRTS QFIVGLNKYL EAVNHNKFSV GMRFKMRFEG EDSPERRYLL  300
LCDLVRFSGT IVGVGDVSAG WSNSQWRSLK VQWDEPATIP RPDRVSSWEI EPFMSSPALN  360
VTQTAMKSKR SRPASDVSSC GFWYPGSSPA HELTQEVQNK ENQIVCSRVM VEGIWPNSPN  420
LNVTSNPFSD AKNKGYPNIN IAPRLSDGPA CDRLEDAKKT ENPLDCWLFG VNLNNNNKCS  480
NVNSCLDKEV GCGSLSNVTS SGPKESNPAN ACETEKIIQS PNYSLSNKKG QKQIISDASP  540
NEWQNQLANV PSMRTRTKVQ MQGVAVGRAL DLSMLNGYDD LIDEVEKLFD IKGELRSQNK  600
WRVTFTDNEN DTMLVGDDPW PEFCNMVKKI FICSKEELKK MKCKLPNSSL EIEETLLSLD  660
SHNRDETQQT HVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-163435513357Auxin response factor 1
4ldw_A1e-163435513357Auxin response factor 1
4ldw_B1e-163435513357Auxin response factor 1
4ldx_A1e-163435513357Auxin response factor 1
4ldx_B1e-163435513357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510661.10.0auxin response factor 18 isoform X2
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A1S2YVP40.0A0A1S2YVP4_CICAR; Auxin response factor
STRINGXP_004510661.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]