PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574324.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 442aa    MW: 50181 Da    PI: 9.628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-122872348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd +l+d +  +G++ W  Ia+++  g+t  qc+ rw++yl
   XP_012574324.1 28 NWTQEEDGILKDQIGIHGTEKWMIIASKLK-GKTTRQCRRRWFSYL 72
                     7****************************9.************997 PP
2Myb_DNA-binding39.41.4e-1278119144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +g W+++Ed+ l +  k+lG++ W+ Ia+ +  gRt++ +k+r+
   XP_012574324.1  78 KGVWSPDEDKVLCETQKMLGNR-WTEIAKVIR-GRTDNAVKNRF 119
                      799*******************.*********.**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.01E-11873IPR009057Homeodomain-like
PROSITE profilePS5129411.9722172IPR017930Myb domain
SMARTSM007175.8E-82574IPR001005SANT/Myb domain
CDDcd001672.92E-92872No hitNo description
Gene3DG3DSA:1.10.10.602.1E-192879IPR009057Homeodomain-like
PfamPF002492.2E-102872IPR001005SANT/Myb domain
SuperFamilySSF466894.11E-2451128IPR009057Homeodomain-like
PROSITE profilePS5129418.62873127IPR017930Myb domain
SMARTSM007175.1E-1177125IPR001005SANT/Myb domain
PfamPF002494.1E-1178119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-1880125IPR009057Homeodomain-like
CDDcd001678.81E-881119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MQTNLDMKKK QKKQGDKESN KKENPYANWT QEEDGILKDQ IGIHGTEKWM IIASKLKGKT  60
TRQCRRRWFS YLNADVKKGV WSPDEDKVLC ETQKMLGNRW TEIAKVIRGR TDNAVKNRFS  120
ALCRKRETYA ALAKENNIPY IDPNNIRNIS HHGHDTAATS ESTVPVKSMR SHLQNGISTN  180
PQPRTLFAEL AQNSNNVNNL QGQYNNSQGT FLKEDVLKIR ACGQTEFLSS LAQKVEIENI  240
KKIWMVLQEF PNRTKGSDIV RHKIQDLPPV ILKDMVEELK SSNDRGHPCS RKINEDSPGS  300
SEYSTVSTLL SQSNGDNVER SLHQDIGTQM KATQFIVKKE VIEDVKGVLY TGKVEQADML  360
DYCNEQINDH YVVSASPKME FSSPLQVTPI FRSLAAGIPS PEFSESEKYF LKKTLGVESP  420
SIKTTFNPLK SPPCKRALRY NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-272912610107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574324.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574324.10.0transcription factor MYB88-like isoform X3
TrEMBLA0A1S3EG270.0A0A1S3EG27_CICAR; transcription factor MYB88-like isoform X3
STRINGXP_004511226.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.21e-102myb domain protein 88