PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574326.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 406aa    MW: 45681.8 Da    PI: 9.6173
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-122970144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +g W+++Ed+ l +  k+lG++ W+ Ia+ +  gRt++ +k+r+
   XP_012574326.1 29 KGVWSPDEDKVLCETQKMLGNR-WTEIAKVIR-GRTDNAVKNRF 70
                     799*******************.*********.**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.122123IPR017930Myb domain
SuperFamilySSF466892.1E-24279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-10332IPR009057Homeodomain-like
PROSITE profilePS5129418.6282478IPR017930Myb domain
SMARTSM007175.1E-112876IPR001005SANT/Myb domain
PfamPF002493.6E-112970IPR001005SANT/Myb domain
CDDcd001673.41E-83270No hitNo description
Gene3DG3DSA:1.10.10.603.0E-143377IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MIIASKLKGK TTRQCRRRWF SYLNADVKKG VWSPDEDKVL CETQKMLGNR WTEIAKVIRG  60
RTDNAVKNRF SALCRKRETY AALAKENNIP YIDPNNIRNI SHHGHDTAAT SESTVPVKSM  120
RSHLQNGIST NPQPRTLFAE LAQNSNNVNN LQGTCHVSNA KSNSSGQYNN SQGTFLKEDV  180
LKIRACGQTE FLSSLAQKVE IENIKKIWMV LQEFPNRTKG SDIVRHKIQD LPPVILKDMV  240
EELKSSNDRG HPCSRKINED SPGSSEYSTV STLLSQSNGD NVERSLHQDI GTQMKATQFI  300
VKKEVIEDVK GVLYTGKVEQ ADMLDYCNEQ INDHYVVSAS PKMEFSSPLQ VTPIFRSLAA  360
GIPSPEFSES EKYFLKKTLG VESPSIKTTF NPLKSPPCKR ALRYNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2127732107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574326.10.0transcription factor MYB88-like isoform X5
TrEMBLA0A1S3EH940.0A0A1S3EH94_CICAR; transcription factor MYB88-like isoform X5
STRINGXP_004511226.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.28e-96myb domain protein 88