PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574399.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 171aa    MW: 19682.5 Da    PI: 9.87
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.42e-13735735
            GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    + TplWR+gpd ++ LCnaCG +y+ kg+
  XP_012574399.1  7 SATPLWRKGPDEKPVLCNACGSRYKVKGT 35
                    34***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-4354IPR000679Zinc finger, GATA-type
PfamPF003202.8E-11735IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-10735IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.025734IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-8853No hitNo description
CDDcd002021.16E-10935No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEKRTESATP LWRKGPDEKP VLCNACGSRY KVKGTLENYL PKNAQPHSYL KHQKEYNQFL  60
KPSNSPAGGI NTNLWSTKIP SKKRSPVKRV PPMEKFHKQL LRLWESEKQH NDSSLDNILL  120
YLFDFILDVA HIVNSSYERI ENLRKIVTLS PNATVLTEDN SKSEVVTFDV T
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574399.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192451.11e-85GATA transcription factor 26-like
TrEMBLA0A3Q7Y3733e-84A0A3Q7Y373_CICAR; GATA transcription factor 26-like
STRINGXP_004488166.17e-79(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.23e-14GATA transcription factor 26