PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574487.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 337aa    MW: 38835.8 Da    PI: 8.0525
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.41.6e-2024110190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +f+ +Y+ ++GF vrk++ +k+k+++ i + +fvCskeg r+ +k++ +  + +raetrt+Cka++ +  + +g++++++++++HnH+l+
  XP_012574487.1  24 QFWLTYSVHAGFGVRKRYASKNKDDT-ISSCRFVCSKEGVRKIDKRD-VFVNIHRAETRTDCKARISLVCK-NGNFVIHEFVEDHNHPLQ 110
                     69*****************9996555.*****************999.99999***************999.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-1724110IPR004330FAR1 DNA binding domain
PfamPF105519.1E-30232326IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSSSNVDWKP RVGMKFDNID VAYQFWLTYS VHAGFGVRKR YASKNKDDTI SSCRFVCSKE  60
GVRKIDKRDV FVNIHRAETR TDCKARISLV CKNGNFVIHE FVEDHNHPLQ LPETTHMLAS  120
HRKITEVQAY EIDLADDSGL RQKSTFQLMS THAGNRANLG FTRLDVKNYL SARRQRSMMY  180
GDVGCLSQXF QRQLLESPSF FHAYQMDIEE QITNVFWCDA NMVLDYGYFG DVVSLDTTYC  240
TNHANRPLAL FSGFNHYRSS IIFGAALLYD ETIESFKWLF DTFLQAHNHK KPKTVFTDQD  300
QAMARALAEV MPETHHGLCT WHLLQNGIKH LGNLMKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574487.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027193270.10.0LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5, partial
TrEMBLA0A3Q7YH290.0A0A3Q7YH29_CICAR; LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5
STRINGXP_004490690.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-61FAR1 family protein