PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012574577.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 782aa MW: 89770.2 Da PI: 6.0504

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012574577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.9	1.1e-30	88	179	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r e++++ + + +r+raetr+gCka+l+vk ++ ++w+vt++++eHnHel+p XP_012574577.1 88 FYNSYARRVGFSTRVSMSRHSSRDGAIIQRSFVCAKEGFRVEKERNplDGRVKRPRAETRVGCKATLVVKIRDGSRWVVTSFVKEHNHELVP 179 9****************************************9999999999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-28	88	179	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-32	300	392	IPR018289	MULE transposase domain
Pfam	PF04434	1.1E-9	568	614	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.583	580	616	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	591	618	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MEFEPMNLSN EVIEFDMTGF GDNDDDDDDV GIDIEHPVED DEDFVDIDSS FQVTAPAATI 60 DPYIPGGDTI LEPCKGMEFE SEEAAKAFYN SYARRVGFST RVSMSRHSSR DGAIIQRSFV 120 CAKEGFRVEK ERNPLDGRVK RPRAETRVGC KATLVVKIRD GSRWVVTSFV KEHNHELVPP 180 DKVHCLRSHR HVSGPAKLLI DTLQGAGIGP SEIMSALIKE YGAISNIGFT ERDCRNYIRS 240 SKQRTLGGDT QILLDYLKSK QAEDPSFFYA VVGGEDHCMR NFLWIDPKAR TNYSYFCDTV 300 TFDTTYRSNR YRLPFAPFTG VNNHGQPVLF GCAFLVNESE AAFVWLFKTW LEAMSRRPPV 360 SITTDHDRVI RSAINRVFPG TRHRFCKWHI FKECQEKLSH VLSEHHNFEA DLHKCVNLTE 420 SIEEFETCWS SLVDMYDLRE HEWLKAIYDD RRQWVPVYMR GLFFAEMSIT QQSDSINSYF 480 DGYINASTTL QLFVKQYEKA LESRYEKEIK ADYDTINTAP VLKTPSPMEK QAAKVYTRKL 540 FKKFQEELIE TLTFLANKVD EEETSIVYRV AKYGENHKAY FVKFNCFEMK ATCSCQMFEF 600 SGIVCRHILT VFRVTNLLTX RNAKSGVILD ERTTDLSNDA LESLSIRYNN LHHEALKYVD 660 EAVKSPKTFD VSMSALREAA NKVALASKSG ERLVMSNETC NEDLHQSKEA TPSCSDTQFS 720 SQLSSSEDDL HGTIEKLTRQ LDRAQRKCEV YRSNLVTILK YIEEQKLELS VKVQNIKLQM 780 KD

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MEFEPMNLSN EVIEFDMTGF GDNDDDDDDV GIDIEHPVED DEDFVDIDSS FQVTAPAATI  60
DPYIPGGDTI LEPCKGMEFE SEEAAKAFYN SYARRVGFST RVSMSRHSSR DGAIIQRSFV  120
CAKEGFRVEK ERNPLDGRVK RPRAETRVGC KATLVVKIRD GSRWVVTSFV KEHNHELVPP  180
DKVHCLRSHR HVSGPAKLLI DTLQGAGIGP SEIMSALIKE YGAISNIGFT ERDCRNYIRS  240
SKQRTLGGDT QILLDYLKSK QAEDPSFFYA VVGGEDHCMR NFLWIDPKAR TNYSYFCDTV  300
TFDTTYRSNR YRLPFAPFTG VNNHGQPVLF GCAFLVNESE AAFVWLFKTW LEAMSRRPPV  360
SITTDHDRVI RSAINRVFPG TRHRFCKWHI FKECQEKLSH VLSEHHNFEA DLHKCVNLTE  420
SIEEFETCWS SLVDMYDLRE HEWLKAIYDD RRQWVPVYMR GLFFAEMSIT QQSDSINSYF  480
DGYINASTTL QLFVKQYEKA LESRYEKEIK ADYDTINTAP VLKTPSPMEK QAAKVYTRKL  540
FKKFQEELIE TLTFLANKVD EEETSIVYRV AKYGENHKAY FVKFNCFEMK ATCSCQMFEF  600
SGIVCRHILT VFRVTNLLTX RNAKSGVILD ERTTDLSNDA LESLSIRYNN LHHEALKYVD  660
EAVKSPKTFD VSMSALREAA NKVALASKSG ERLVMSNETC NEDLHQSKEA TPSCSDTQFS  720
SQLSSSEDDL HGTIEKLTRQ LDRAQRKCEV YRSNLVTILK YIEEQKLELS VKVQNIKLQM  780
KD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012574577.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027361490.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1LIE2	0.0	I1LIE2_SOYBN; Uncharacterized protein
STRING	GLYMA11G09400.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]