PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574919.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YA
Protein Properties Length: 244aa    MW: 26935.3 Da    PI: 10.3191
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1063.3e-3387143158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRhkhAl+R RgsgGrF
  XP_012574919.1  87 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHKHALNRVRGSGGRF 143
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.6E-3785146IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.23286146IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-2889143IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.8E-2589111IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686091111IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.8E-25120143IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MWSLRSADVV SYMKSFLFLN HPNSEFNCSP VDRNHSMAHA PYPYGDPIFA GSLVAYAPQA  60
VNQPQMLPQM MGLASTRVAL PLDLAQDGPI YVNAKQYHGI LRRRQSRAKL EAQNKLIKSR  120
KPYLHESRHK HALNRVRGSG GRFLSTKQLS QSNTEFVTGN QSGSGSINKY QKEDEMESRS  180
SKTGDNASSI TTCSDRTCFS GNSFNFRQPE HMFLGNSPNM GGGPPQCSGG LTFGGTKQRA  240
SVVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2287148263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182680.0JQ918268.1 Medicago truncatula nuclear transcription factor Y subunit A3 (NF-YA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574919.10.0nuclear transcription factor Y subunit A-4-like
TrEMBLA0A1S3EHR70.0A0A1S3EHR7_CICAR; nuclear transcription factor Y subunit A-4-like
STRINGXP_004513462.11e-174(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-43nuclear factor Y, subunit A3